PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 260aa MW: 28013.4 Da PI: 8.9045 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.7e-14 | 106 | 150 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+ Aco005652.1 106 PWSEEEHRLFLAGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKF 150 7******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.731 | 98 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.58E-17 | 101 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-17 | 103 | 154 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-10 | 103 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-11 | 104 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.41E-10 | 106 | 151 | No hit | No description |
Pfam | PF00249 | 7.2E-11 | 106 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRKCSHCGN YGHNLRTCSS HRSAFGGGGG GGLKLFGVQV YAASALKKSF STECLNSCYL 60 ASSSASPSSS SSSSLVSTEG ATEKISYGYL SDGLLGRAQD RRKGIPWSEE EHRLFLAGLE 120 KLGKGDWRGI SRNFVTTRTP TQVASHAQKF FLRQNSLNNK KRRSSLFDMV SSCEVAAHPY 180 EFPSLKDLSL SNELHAPTLS LKTVDTEASA NIGIDLNSAC HSQFTKPFLS EEKSCIDLEL 240 SISSSRPSNS KYLATDFAL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM660908 | 0.0 | KM660908.1 Ananas bracteatus clone 39422 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098178.1 | 0.0 | transcription factor MYB1R1-like | ||||
Swissprot | Q7XC57 | 6e-49 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A199VEK6 | 0.0 | A0A199VEK6_ANACO; Transcription factor MYB1R1 | ||||
STRING | XP_008799749.1 | 2e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 2e-57 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco005652.1 |
Publications ? help Back to Top | |||
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