PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 453aa MW: 51192.9 Da PI: 5.1674 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.9 | 2.5e-36 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw n++sfvv++++ f+k++LpkyFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+++ll++i+ Aco005592.1 14 FLTKTYDMVDDPSTDSIVSWGLNNTSFVVWNPRGFEKDLLPKYFKHNNFSSFVRQLNTYGFHKIDPDQ---------WEFANEDFIRGQRHLLKNIH 101 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Aco005592.1 102 RRKP 105 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 6.94E-35 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.6E-39 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.0E-61 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MEGSPGSSNS PPPFLTKTYD MVDDPSTDSI VSWGLNNTSF VVWNPRGFEK DLLPKYFKHN 60 NFSSFVRQLN TYGFHKIDPD QWEFANEDFI RGQRHLLKNI HRRKPVHSHS LHNQGNGPLA 120 EPERQELEEE IEKLKHEKGL LIQELQKHTQ QQHGMDQQMQ SLEERLQVME QRQRNLMGSL 180 SQIVQTPGFL SKFVQKPDHF GKKRRLPKSN FFYEDANMEE NRIAPLQVVN KERSDVFATH 240 ALDTEPFDKM ESSLNSLEIF FRGVSQALGE EDMCYDGFVP GPPSTLVLVE MDASSGETDV 300 NMHSPPKLRS SSPCIGDIHS SPELAESTNY AESPALPLTE IHVVETHADN QSKIVEIDVN 360 SEPTVAEGDS TREKPNTAAS AVPTGVNDVF WEQFLTETPG SIDAQEVQSE RRDADEKRNG 420 GKVVGMGQNW WKKKNVDHLT EKMGHLSSSE KT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020099044.1 | 0.0 | heat stress transcription factor A-4b | ||||
Swissprot | Q94J16 | 1e-160 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | A0A199VNH5 | 0.0 | A0A199VNH5_ANACO; Heat stress transcription factor A-4b | ||||
STRING | XP_008776668.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 7e-74 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Phytozome | Aco005592.1 |
Publications ? help Back to Top | |||
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