PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 232aa MW: 26423.3 Da PI: 8.7492 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 77.2 | 2.8e-24 | 28 | 97 | 25 | 103 |
SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 +nsf+v+d+ +f++ +Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g+++ll i r+k++ Aco005573.1 28 SNSFLVIDPASFSQLLLPCFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQTHLLPCIVRRKKT 97 69****************************************999.........*********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.0E-26 | 13 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.5E-25 | 26 | 88 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-22 | 27 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.8E-20 | 28 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-9 | 43 | 55 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 44 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-9 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEEATRVPHG HSLSFAFASP SHHQAPGSNS FLVIDPASFS QLLLPCFFKH NNFSSFVRQL 60 NTYGFRKVDP DRWEFAHESF LRGQTHLLPC IVRRKKTNEI LAEVKEEEML IEEVRRLRKE 120 QKALEEELQG MNKRLQTTEN RPQQIMSFLT RVAQDPDLLS RLILSKKKQR PGSEHKKPRL 180 MVEPATTKLL EQSVGIASDA AAPAAKVQWS LEEAEEVPFP FSILGHDISK L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-16 | 25 | 94 | 40 | 120 | Heat shock factor protein 1 |
5hdg_A | 6e-16 | 25 | 94 | 30 | 110 | Heat shock factor protein 1 |
5hdn_A | 6e-16 | 25 | 94 | 30 | 110 | Heat shock factor protein 1 |
5hdn_B | 6e-16 | 25 | 94 | 30 | 110 | Heat shock factor protein 1 |
5hdn_C | 6e-16 | 25 | 94 | 30 | 110 | Heat shock factor protein 1 |
5hdn_D | 6e-16 | 25 | 94 | 30 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098172.1 | 1e-145 | heat stress transcription factor C-1b-like | ||||
Refseq | XP_020098174.1 | 1e-145 | heat stress transcription factor C-1b-like | ||||
Refseq | XP_020098175.1 | 1e-145 | heat stress transcription factor C-1b-like | ||||
Swissprot | Q942D6 | 2e-61 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | A0A199UDT8 | 1e-64 | A0A199UDT8_ANACO; Heat stress transcription factor C-1b (Fragment) | ||||
STRING | XP_008810034.1 | 1e-62 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-55 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Aco005573.1 |
Publications ? help Back to Top | |||
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