PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28572.3 Da PI: 8.0364 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 105 | 157 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s ykGVr+++ +g+++AeIrd s +g +r++lg+f taeeAa a + a+++++g+ Aco005327.1 105 SNYKGVRRRP-WGKFAAEIRDLSRRG--ARVWLGTFETAEEAALAFDVAALRMRGP 157 57********.**********53333..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-13 | 105 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-22 | 105 | 166 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.75E-30 | 105 | 164 | No hit | No description |
PROSITE profile | PS51032 | 23.248 | 106 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-36 | 106 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 106 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAIQLQTLEA DETILETIWS SFITGNAPKC SQPGSERGEA QLAMLERLPS LGRWISMGAE 60 SWEELLGGII SSDGCRSASP TNSATQHCLS PTAECPKAEK VASSSNYKGV RRRPWGKFAA 120 EIRDLSRRGA RVWLGTFETA EEAALAFDVA ALRMRGPRTR LNFPLEVVES ASSEATWIEK 180 PQRSASSTCP ACPLYGFTVT SQKSKRRRKR KWNYTEEVVH EVPAQKRTSC IQEIVSTQTD 240 VVVLQDLGSE YLERLLSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 102 | 167 | 1 | 66 | ATERF1 |
3gcc_A | 3e-26 | 102 | 167 | 1 | 66 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 210 | KRRRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098403.1 | 0.0 | ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A199ULC2 | 0.0 | A0A199ULC2_ANACO; Ethylene-responsive transcription factor 2 | ||||
STRING | XP_008798293.1 | 1e-86 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-19 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Aco005327.1 |