PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005226.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bZIP

Protein Properties

Length: 479aa MW: 50074.2 Da PI: 5.0199

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005226.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.6	1.8e-15	264	318	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + k+ rr+ +NRe+ArrsR+RK+a + Le v +L eN++L k+l ++++ Aco005226.1 264 DAKKMRRMLSNRESARRSRRRKQAHLSDLEGQVSQLRVENSTLLKRLTDVNQKYN 318 5799****************************************99999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.6E-12	261	317	No hit	No description
SMART	SM00338	1.2E-16	262	326	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.243	264	318	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-13	265	317	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-12	266	317	No hit	No description
CDD	cd14702	3.87E-7	267	318	No hit	No description
PROSITE pattern	PS00036	0	269	284	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.5E-45	333	453	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MERVFSVDEM SDPFWVASPA TGAGAVAGGG GGGGGRGSAM NRSPSEWYFQ RFLQEAEEVA 60 APSSSAAAAA AAAAPSNSNL IPNPNHNRAP IPDPRPVPGP GAAASGVLSS GGSLKEGGRG 120 GDDDVVEIKV PADLASAGTY RQPSDAPAAA AAAEEDVDPG EYHALLRQKL NMQCAAVALS 180 RVSAVKPQES SPLADNNSQT SDASQWASQV ASAKGSGTSG GLAPHVLQNS AAAEKPPTSS 240 SSREQSDDDD DGEIETTENM DLTDAKKMRR MLSNRESARR SRRRKQAHLS DLEGQVSQLR 300 VENSTLLKRL TDVNQKYNDA SVDNRLLKAN VETLRAKVKM AEDTVKRVTG ISPLYPTMPD 360 MSSMGMPFSG SPSDATSGDA AVPIQDDSAH FFQPPPNDYH NRINSCLPEM GSAAPATDVA 420 RGPTTGVKMG RTASLQRVAS LEHLQKRICG EPSPSVPWDA SPPTWDPEAP TSNKRDPA*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MERVFSVDEM SDPFWVASPA TGAGAVAGGG GGGGGRGSAM NRSPSEWYFQ RFLQEAEEVA  60
APSSSAAAAA AAAAPSNSNL IPNPNHNRAP IPDPRPVPGP GAAASGVLSS GGSLKEGGRG  120
GDDDVVEIKV PADLASAGTY RQPSDAPAAA AAAEEDVDPG EYHALLRQKL NMQCAAVALS  180
RVSAVKPQES SPLADNNSQT SDASQWASQV ASAKGSGTSG GLAPHVLQNS AAAEKPPTSS  240
SSREQSDDDD DGEIETTENM DLTDAKKMRR MLSNRESARR SRRRKQAHLS DLEGQVSQLR  300
VENSTLLKRL TDVNQKYNDA SVDNRLLKAN VETLRAKVKM AEDTVKRVTG ISPLYPTMPD  360
MSSMGMPFSG SPSDATSGDA AVPIQDDSAH FFQPPPNDYH NRINSCLPEM GSAAPATDVA  420
RGPTTGVKMG RTASLQRVAS LEHLQKRICG EPSPSVPWDA SPPTWDPEAP TSNKRDPA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	285	RRSRRRKQ
2	280	285	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666058	5e-83	KM666058.1 Ananas bracteatus clone 51280 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092301.1	0.0	light-inducible protein CPRF2-like
Swissprot	Q7X9A8	2e-94	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A199UYR5	0.0	A0A199UYR5_ANACO; Light-inducible protein CPRF2
STRING	XP_008786076.1	1e-135	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-50	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aco005226.1

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]