PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005206.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CPP
Protein Properties Length: 366aa    MW: 40371.9 Da    PI: 5.5206
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005206.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.37.4e-1481118340
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +++C+Ckks+Clk+YC Cfa g++Cse+C C+ C+N+ 
  Aco005206.1  81 CRRCSCKKSRCLKLYCACFAGGTYCSESCGCQLCFNNP 118
                  789*********************************96 PP
2TCR505.7e-16166203239
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  +kkgCnCkk++ClkkYC+Cf+ g  Cs  CkCedC+N 
  Aco005206.1 166 RKKGCNCKKTSCLKKYCDCFQGGIGCSLLCKCEDCQNI 203
                  79***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-1279120IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.10480205IPR005172CRC domain
PfamPF036382.9E-1082117IPR005172CRC domain
SMARTSM011143.4E-15165206IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.3E-12167202IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MATEDTSASE NPPIDPPLSP PSTSDPEEPR IDPAPGDEKD AKDADGRDSS SQATADVLSV  60
EVGLDQGKRE APEDGGEGNG CRRCSCKKSR CLKLYCACFA GGTYCSESCG CQLCFNNPTY  120
GETVHSTRKD IWLRKGCSFP LKANETSEAA SGSKKDTSKS PSSSQRKKGC NCKKTSCLKK  180
YCDCFQGGIG CSLLCKCEDC QNIFGRKVGG FLEGQRNLPS IGWNDDDYSD DEEDDYTIAA  240
RSPFHQSPFS RESSFHQANP DVKADMMNGQ IYWQLSPLKA QPWHRVKRPN EDSVADISHK  300
RHLKNEDKYT ISRCIEVMSG IAELSQEEKS LAPDVFVDPH NREIFLSLSG DVRSMWLRRK  360
LEQLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6622521e-111KM662252.1 Ananas bracteatus clone 45816 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093119.10.0protein tesmin/TSO1-like CXC 7
TrEMBLA0A199VQL40.0A0A199VQL4_ANACO; CRC domain-containing protein TSO1
STRINGLPERR05G18130.17e-98(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-32Tesmin/TSO1-like CXC domain-containing protein