PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005128.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YA
Protein Properties Length: 344aa    MW: 37106.6 Da    PI: 9.6299
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005128.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.11.1e-31173229158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQ+++Il+RR++Rak+e+e+kl +k rkpylheSRh hA+rR+RgsgGrF
  Aco005128.1 173 DGPIYVNAKQFNGILRRRKARAKAEKENKL-TKLRKPYLHESRHLHAMRRARGSGGRF 229
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-35171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.363172232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.5E-23175197IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.4E-29175229IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.5E-23206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQATMTFKSP GGGVGQVSVT QPSNGTPLPW WIGGGSHALY GDSLSQFKSL NLENSNNRED  60
QVSIVSKQMN QAMGPMLTQG SPVVEKEVNG TVMFSIFPGQ SDSGKGQKSQ ELSPTISQLS  120
PFPEYQGRFE LGLGQSPVCS NYSFADQCYG LYATYGAQAT HGRMLLPLSM TADGPIYVNA  180
KQFNGILRRR KARAKAEKEN KLTKLRKPYL HESRHLHAMR RARGSGGRFL NTKNQVNGQA  240
SSTDCKSKSM PPPARPTTSP SSEILQSDSS NPHSRSGGGS SFSGSEVTSI YGRDDLDHFN  300
STDHLHSSMI HPLSSMIDGE HQISIIHGKW GPAANGCCNL LKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-18173230260HAPB protein
4g92_A4e-18173230260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093143.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_020093144.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A199V8E80.0A0A199V8E8_ANACO; Nuclear transcription factor Y subunit A-10
STRINGXP_008811292.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-32nuclear factor Y, subunit A10