PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005080.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 870aa    MW: 94751.9 Da    PI: 6.5787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-183794457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aco005080.1 37 YVRYTPEQVEALERVYTECPKPSSMRRQQLIRECpvlaNIEPKQIKVWFQNRRCREKQ 94
                 6789****************************************************97 PP
2START164.48e-521853922204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  i +g  g ++l++++
  Aco005080.1 185 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCHDVLTEIPTGngGNIELIYMQ 281
                  68999*****************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+    +++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s  + 
  Aco005080.1 282 TYAPTTLAAaRDFWTLRYTTGLEDGSLVICERSLTPSTGGPSgppAPNFVRAEMLPSGYLIRPCEGGGSMIHIVDHVDLDVWSVPEVLRPLYESPKIV 379
                  *************************************99999999***************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++ a+l++ +
  Aco005080.1 380 AQKMTIAALRHIR 392
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3373195IPR001356Homeobox domain
SMARTSM003897.9E-153399IPR001356Homeobox domain
CDDcd000861.90E-163696No hitNo description
SuperFamilySSF466891.97E-163698IPR009057Homeodomain-like
PfamPF000464.5E-163794IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-183894IPR009057Homeodomain-like
CDDcd146862.46E-688127No hitNo description
PROSITE profilePS5084825.216175403IPR002913START domain
CDDcd088753.93E-69179395No hitNo description
Gene3DG3DSA:3.30.530.201.4E-23183367IPR023393START-like domain
SMARTSM002341.0E-46184394IPR002913START domain
SuperFamilySSF559613.98E-40185396No hitNo description
PfamPF018521.8E-49185392IPR002913START domain
PfamPF086701.2E-50721868IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009880Biological Processembryonic pattern specification
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MAAMVVAGKE KGAGAAAAAA AAAAAALSQQ QIDAGKYVRY TPEQVEALER VYTECPKPSS  60
MRRQQLIREC PVLANIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLSA MNKLLMEEND  120
RLQKQVSHLV YENGYMRQQL HTASVATTDT SCESVVTSGQ HHQQQNPTPQ HPQRDANNPA  180
GLLAIAEETL AEFLSKATGT AVDWVQMVGM KPGPDSIGII AVSHNCSGVA ARACGLVSLE  240
PTKVAEILKD RPSWFRDCRC HDVLTEIPTG NGGNIELIYM QTYAPTTLAA ARDFWTLRYT  300
TGLEDGSLVI CERSLTPSTG GPSGPPAPNF VRAEMLPSGY LIRPCEGGGS MIHIVDHVDL  360
DVWSVPEVLR PLYESPKIVA QKMTIAALRH IRQIAQESSG EIPYGGGRQP AVLRNFSQRL  420
SRGFNDAVNG FADDGWSLIN SDGVEDVTIA INASPNKLFG SNISCSPLFS ANGGGVLCAK  480
ASMLLQNVPP ALLVRFLREH RSEWADCGID AYSAASLRAS PYALPGLRSS SGFLGSQVIL  540
PLGHTVEHEE FLEVIRLEGH GFHQDDIVLS RDMYLLQVCS GVDENAVGAC AQLVFAPIDE  600
SFADDAPLLP SGFRVIPLDA KTDAPTATRT LDLASTLEVG SGGAARSPND TSNAYNSRSV  660
LTIAFQFMYE NHLRENVAAM ARQYVRSVVA SVQRVAMAIS PSRLGAQIGM KHPTGFPEAH  720
TLARWISRSY RFHTGVELLR ADSQTNDTLL KLLWHHSDAI MCCSLKATFS QASPVFTFTN  780
QAGLDMLETT LIALQDITLE KILDESGRKA LCSEFPKIMQ QGFAYLPGGI CMSSMGRPVS  840
YEQAVAWKVL NEEDSPHCLA FMFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00170DAPTransfer from AT1G30490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092733.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A199VR400.0A0A199VR40_ANACO; Homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]