PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LSD | ||||||||
Protein Properties | Length: 136aa MW: 14425.6 Da PI: 8.8211 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 48.1 | 1.9e-15 | 8 | 32 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+t+ Aco005061.1 8 CGGCRTLLMYNRGATSVRCSCCNTI 32 ***********************97 PP | |||||||
2 | zf-LSD1 | 41.3 | 2.5e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Crt+L YP+GA+sV+Ca+C+ V Aco005061.1 46 CAQCRTTLLYPYGASSVKCAICHYV 70 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.8E-17 | 5 | 35 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.2E-14 | 8 | 32 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.4E-12 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.0E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDTAQLICGG CRTLLMYNRG ATSVRCSCCN TINLVRSANG VAQVNCAQCR TTLLYPYGAS 60 SVKCAICHYV TNIGMNNMRP PIPTAHRPNE APYTPPSTSS PTTQTQTVVV ENPMSVDERG 120 KLVSNVVVGV TTGKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092182.1 | 2e-93 | protein LOL2 | ||||
Swissprot | Q2QMB3 | 1e-59 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A199W473 | 5e-92 | A0A199W473_ANACO; Protein LOL2 | ||||
STRING | XP_008776040.1 | 7e-71 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-49 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco005061.1 |
Publications ? help Back to Top | |||
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