PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005059.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 308aa    MW: 33783.4 Da    PI: 9.316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005059.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.86.7e-43111401121
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..........lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                  lppGfrFhP+d+el+++yL++k+ +++          +       ++  vd++k+ePwdLp+++  + k+wyf+s rd+kyatg r+nrat sgyWka
  Aco005059.1  11 LPPGFRFHPRDDELICDYLAPKIGKDTkgggggggglF---CgcpALVAVDLNKCEPWDLPETACVGGKDWYFYSLRDRKYATGLRTNRATLSGYWKA 105
                  79*********************999966666666552...0444799*************7777799****************************** PP

          NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                  tgkd++v + +++lvg++ktLvfy+grapkg+kt W
  Aco005059.1 106 TGKDRAVSR-RRALVGMRKTLVFYQGRAPKGKKTPW 140
                  *******99.999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-463151IPR003441NAC domain
PROSITE profilePS5100537.92511164IPR003441NAC domain
PfamPF023651.4E-1912140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSFLSMVEAK LPPGFRFHPR DDELICDYLA PKIGKDTKGG GGGGGGLFCG CPALVAVDLN  60
KCEPWDLPET ACVGGKDWYF YSLRDRKYAT GLRTNRATLS GYWKATGKDR AVSRRRALVG  120
MRKTLVFYQG RAPKGKKTPW DDWVLCRVFS KHRGNNNINN VKPHSMGTTT TTTTTTTSLY  180
EDPLNSSLPP LMDTYAYTTT ITTPDAQTPF TPQQQQQPLN GFGQVPCFSS FARYPNPLGL  240
GLGPHHHHHL HLPFMERGPL TPIKAPAHSG PLPELGPPPY DATKVGEAGW VAFLSESNLT  300
SSWNPFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-3951519168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653746e-32EU965374.1 Zea mays clone 285645 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84TE69e-69NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2H3X5B96e-87A0A2H3X5B9_PHODC; NAC domain-containing protein 21/22-like
STRINGXP_008778535.11e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-68NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]