PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20148 Da PI: 8.6024 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.5 | 3.6e-41 | 14 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal........peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+dC++ap+fpae+p+kfanvhk+FGasnv+kll++ p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l Aco005023.1 14 PCAACKLLRRRCAQDCIFAPHFPAEEPQKFANVHKVFGASNVSKLLQSYadnglqeiPMQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQIEAL 111 7********************************************98765555555588889************************************ PP DUF260 91 kaelallkee 100 +a+lal+++e Aco005023.1 112 QAQLALAQAE 121 ******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.746 | 13 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-41 | 14 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MREVGGRKAG AASPCAACKL LRRRCAQDCI FAPHFPAEEP QKFANVHKVF GASNVSKLLQ 60 SYADNGLQEI PMQHRGDAVS SLVYEANARV RDPIYGCVGA ISSLQQQIEA LQAQLALAQA 120 EMVHLRMRQS AYLAHHLRRP ATANIGSRST TTGSSSSLSS PKPFFTLEGM AVDQTELDYP 180 PMWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-46 | 10 | 123 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-46 | 10 | 123 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139174 | 4e-35 | AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 4e-35 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 4e-35 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093150.1 | 1e-107 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 5e-60 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A199VVM7 | 1e-106 | A0A199VVM7_ANACO; LOB domain-containing protein 4 | ||||
STRING | XP_008787332.1 | 2e-83 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 8e-53 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Aco005023.1 |