PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco004983.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | TALE | ||||||||
Protein Properties | Length: 426aa MW: 47234.2 Da PI: 7.2881 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 347 | 381 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+++gL+++q+ +WF N+R ++ Aco004983.1 347 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 381 669*****************************885 PP | |||||||
2 | ELK | 35.2 | 2.7e-12 | 301 | 322 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sL+qE+s Aco004983.1 301 ELKQHLLKKYSGYLSSLRQELS 322 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.1E-19 | 123 | 167 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.2E-20 | 124 | 166 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.5E-29 | 173 | 224 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.0E-24 | 178 | 223 | IPR005541 | KNOX2 |
SMART | SM01188 | 5.6E-7 | 301 | 322 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.5E-9 | 301 | 322 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.348 | 301 | 321 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.876 | 321 | 384 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-19 | 322 | 397 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-12 | 323 | 388 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 326 | 386 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.21E-11 | 333 | 385 | No hit | No description |
Pfam | PF05920 | 1.7E-16 | 341 | 380 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 359 | 382 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MEEYSLLGGS NCNSSRGATN ANTNAITTNS FMYLPSSTAI GAAAAAAAAT TPPPSPPPHV 60 VVAPPHISGQ YGRSYQYPHR FINQPLKAEA GPSTTQYPPL ERGAILLEHG GGARQETSPR 120 EEEALKAKIM SHPQYSTLLG AYLDCQKVGA PQEVVDRLTV MAREFERRCP SGGRHDLSTD 180 PELDQFMEAY YNMLVKYREE LTRPIQEATE FLKRVESQLN SLTNGASSRF FTPGQGFKCQ 240 STQARTKYIR LFLVIALTCS LFAPLESADD KCEGVGSSEE DRDASGEGEA PEIDPRAEDK 300 ELKQHLLKKY SGYLSSLRQE LSKKKKKGKL PKDARQKLLS WWELHYKWPY PSETEKVALA 360 ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDGFHPQN AAAAAAAALY MDGQFTGDGM 420 YRLGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM662326 | 1e-171 | KM662326.1 Ananas bracteatus clone 45967 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093210.1 | 0.0 | homeobox protein rough sheath 1-like isoform X1 | ||||
Swissprot | O04135 | 1e-133 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A199UW57 | 0.0 | A0A199UW57_ANACO; Homeobox protein knotted-1-like 2 | ||||
STRING | XP_008798922.1 | 1e-144 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4061 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-104 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Aco004983.1 |