PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco004982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 27376.6 Da PI: 7.9851 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 78 | 130 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq Le+ F+++++++ + ++ LA+kl+L rqV vWFqNrRa+ Aco004982.1 78 RKKLRLTKEQSSLLEDSFREHSTLNPRLKQALARKLNLRPRQVEVWFQNRRAR 130 788899**********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 77.3 | 2.5e-25 | 78 | 150 | 1 | 74 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kk+rl+keq++lLE+sF+e+++L+p+ K++lar+L+l+prqv+vWFqnrRAR l ++ ++L+r++++lk Aco004982.1 78 RKKLRLTKEQSSLLEDSFREHSTLNPRLKQALARKLNLRPRQVEVWFQNRRARCC-ETLSTENRKLQRELQELK 150 69***************************************************84.456677777777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.516 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-12 | 76 | 138 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.85E-16 | 76 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.37E-15 | 78 | 131 | No hit | No description |
Pfam | PF00046 | 6.5E-15 | 78 | 130 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 83 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00340 | 2.0E-7 | 118 | 162 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MIMDTACEAN LVLGLSCAST VEFEPLPPNW SAAEPSLTLG LFESANPKTE TEARKPELGD 60 KESCRAISDE VEEEGIARKK LRLTKEQSSL LEDSFREHST LNPRLKQALA RKLNLRPRQV 120 EVWFQNRRAR CCETLSTENR KLQRELQELK SLKFMQPLYT ATALTVCPSC KRMITSTRLL 180 KSDCEGPLTH DVSLKPFLNG YSYARKDQLA RFEWCVYICS LLEVWNKTCY DMVRTTCVL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020091584.1 | 1e-123 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 4e-45 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A199VPM2 | 1e-119 | A0A199VPM2_ANACO; Homeobox-leucine zipper protein HAT22 | ||||
STRING | XP_008798887.1 | 1e-49 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-47 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco004982.1 |
Publications ? help Back to Top | |||
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