PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004929.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 362aa MW: 37179.6 Da PI: 8.4123

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004929.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8e-39	63	121	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk k + Aco004929.1 63 SEPLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKAKPA 121 57789**************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.0E-32	65	119	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-24	66	115	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MIQELLMGAG VVEENKIIPN IPSTAAAAAA AAAAASSPSS SPVSAAGTSG IVTAAAAAAA 60 ASSEPLRCPR CDSSNTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKAKP 120 ATSTSAAAAA AAAKPRPPPS AAVDFPPWAA APPPPPPQHA SAHLMALLRA TAIPYPNPNP 180 IINPLRCKED VAILNAHKVF DAMGATQSLT LEPLNNHHSC NSNGNSNNNN NYSNVSWRHS 240 YVHGYHQPLL GGNAQSAGVE ELHQRFKPLG ATYSDQLQAV IGNMGGGLGG SSSMFSSSSS 300 SSCLFSSTCS ANIESTATIA NAGGNSTSIL EPISLAGGEL GYWNPAMAWS DPHATINGAF 360 P*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MIQELLMGAG VVEENKIIPN IPSTAAAAAA AAAAASSPSS SPVSAAGTSG IVTAAAAAAA  60
ASSEPLRCPR CDSSNTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKAKP  120
ATSTSAAAAA AAAKPRPPPS AAVDFPPWAA APPPPPPQHA SAHLMALLRA TAIPYPNPNP  180
IINPLRCKED VAILNAHKVF DAMGATQSLT LEPLNNHHSC NSNGNSNNNN NYSNVSWRHS  240
YVHGYHQPLL GGNAQSAGVE ELHQRFKPLG ATYSDQLQAV IGNMGGGLGG SSSMFSSSSS  300
SSCLFSSTCS ANIESTATIA NAGGNSTSIL EPISLAGGEL GYWNPAMAWS DPHATINGAF  360
P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC099043	7e-66	AC099043.6 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence.
GenBank	AK063380	7e-66	AK063380.1 Oryza sativa Japonica Group cDNA clone:001-114-F11, full insert sequence.
GenBank	AP014959	7e-66	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	7e-66	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092676.1	0.0	dof zinc finger protein DOF1.1-like
TrEMBL	A0A199VXM7	0.0	A0A199VXM7_ANACO; Dof zinc finger protein DOF5.4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	1e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco004929.1