PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004823.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 567aa    MW: 63938.5 Da    PI: 7.4807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004823.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.2e-12108148445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
      Aco004823.1 108 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKAQCIDHYT 148
                      *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250246.6E-16635562IPR016827Transcriptional adaptor 2
SMARTSM002911.0E-104489IPR000433Zinc finger, ZZ-type
PfamPF005692.8E-94688IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.8354891IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.18E-1448111No hitNo description
CDDcd023352.36E-264896No hitNo description
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.72E-12101154IPR009057Homeodomain-like
PROSITE profilePS5129322.48103155IPR017884SANT domain
SMARTSM007174.6E-11104153IPR001005SANT/Myb domain
PfamPF002494.6E-12107148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-8108150IPR009057Homeodomain-like
CDDcd001672.80E-11108149No hitNo description
SuperFamilySSF466892.69E-22463555IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGRSRAVPNS GDDEANQRSK RRRVASSGET LETITSGSGT NDGKKALYHC NYCNKDISGK  60
IRIKCSKCPD FDLCVECFSV GAEVTPHKSN HPYRVMDNLS FPLICPDWNA DEEILLLEGI  120
EMYGLGNWAE VAEHVGTKSK AQCIDHYTTA YMNSPCYPLP DMSRVNGKNR KELLAMAKVQ  180
GEGKKGNSML GDVTVKEESP FSPSRVKVED SGGEAPAGRS PSNLSADKHM DRSVGVKKPK  240
YSGEEGPSVA ELSGYNPKRQ EFDPEYDNDA EKSLAEMEFK ENDSETDREL KLRVLRIYLS  300
RDINYVNILC HMKDMREWLD ERKRRKEFIL ERKLLFPNPL EKELSNEDKE IYHRFKVFMR  360
FLSQEEHETL VRSVIEEKKI RRRIQELQEC RAAGCRTLAE AKTYIEQKRK KEIEANAQKT  420
KESGQALLST KGVQKTGRPA KVESDGSPRN SVDPKIKGSV GLDSGGKDSP TAMGLINTKS  480
WDDWDITGLP GAELLSETEQ RLCCQNRLLP SHYLKMQEVL VQEILKGTVM KKSDAHGLFK  540
VDPIKLDHIY EMVTKKLGHH EESPIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E6e-38481635120Transcriptional adapter 2
6cw3_G6e-38481635120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2321326RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092928.10.0transcriptional adapter ADA2-like
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A199V9500.0A0A199V950_ANACO; Transcriptional adapter
STRINGXP_008780988.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]