PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004686.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 268aa MW: 28881.6 Da PI: 8.6383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004686.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	203	248	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k s +++L +Av+YIk+Lq Aco004686.1 203 SIAERERRIRISKRLRKLQDLVPNM----DKQTSTSDMLDLAVQYIKDLQ 248 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.678	197	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	200	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.68E-12	201	252	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.8E-15	202	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-10	203	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	203	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MMNRFEPDGR KKPSPMGPPA GLARFGSAPG SLLAGIADSV IGGAGGGGRA ALVRHSSSPA 60 GLLSHLGVDH GPRGIGSYSQ TGTEFVQAMM ASQKLRPQWS FSRQDSLSQI AEMSIPDIGE 120 SSNDFSITSW DDTNSFMFSA PSSKRAKDNN AEIITSMSNL DSQIGLQGTS LEISGMENYL 180 QIQEDSVACK LRAKRGCATH PRSIAERERR IRISKRLRKL QDLVPNMDKQ TSTSDMLDLA 240 VQYIKDLQSQ VQKLNEEQAN CTCSSKV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089402.1	0.0	transcription factor bHLH128-like isoform X2
Swissprot	Q8H102	4e-50	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A199W8V4	1e-125	A0A199W8V4_ANACO; Transcription factor bHLH128
STRING	GSMUA_Achr1P27710_001	1e-102	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	6e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco004686.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]