PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004551.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 711aa    MW: 78889.8 Da    PI: 6.9797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004551.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-075193347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e + +a +q G++ +++I  +++  +   q++++++ +
      Aco004551.1 51 AWTRQEEENFFNALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 93
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-104498IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-54696IPR009057Homeodomain-like
PROSITE profilePS5129312.6944798IPR017884SANT domain
SMARTSM007175.1E-54896IPR001005SANT/Myb domain
PfamPF002491.4E-55193IPR001005SANT/Myb domain
CDDcd001672.56E-55194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MQLDSPVDME LQITPAENVL VKEVELSFTP PVSATVHPQK PAKRPTRQWA AWTRQEEENF  60
FNALRQVGKN FEKITCRVQS KNKDQVRHYY YRLVRRMNKL LGPGLYLDAR NSKDTIAAML  120
RWWSLLEKFS CTASKLHLKP RRFKIFIEAL ENQLLKDRNK TRRKRPQEDI YLTPTSPILT  180
DGHPVKLLAV DTQNINLMGS TKGAFFKRNA DANTNFKLKA TKGDLSTTRT VKQKRRAGGV  240
VASSAYRRWE KAAIAGVSLV ADAAEQLERS TISQNSSVNA GTFNALPHET YSDKGICSTQ  300
NLNEATIQPF VKLKLQLFPI SEAIRKALEK DAHNPHLELT LSARKRIASV LDHLSRKWGS  360
SSVASGELML FPYNAHQEDL ASYPRWTMKD TVVAADVFIS VGSPATFRLR YGWFSTADLD  420
NFMVTKGKET GCILKDNLDV NKVGTMRVDE TSEQPSDHME DQSTSAVVLP PSKTPSSQVG  480
VENREQISGQ QDNVLVNKGA KCSALSAGEW ADSLISVGDL LSEASRAAAV ANSDCNDETS  540
RSCDSFDAAI AAHISAHQST NSSPEIPISS ILGAEETCDA FSFRRVPTPK QEVLNPSSSS  600
LGFKDFLQDS AGALPSDDLN SSERLFSEDL MDNNNDSPSK DPCITEIFWP DSLGPLDLEA  660
PFKYQVHDLV FGDSLSSLSR IMASSLDAFR NLSFFGTDKN DREREETCKD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6615533e-82KM661553.1 Ananas bracteatus clone 43962 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089126.10.0TSL-kinase interacting protein 1
SwissprotQ8LJT81e-175TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A2H3Y0630.0A0A2H3Y063_PHODC; TSL-kinase interacting protein 1 isoform X2
STRINGXP_008791198.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-160TSL-kinase interacting protein 1