PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004364.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 324aa MW: 37206.3 Da PI: 7.5009

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004364.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.3e-53	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yL+kkv+ + ++l +vi+ +d++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ Aco004364.1 10 VPPGFRFHPTDEELLHYYLRKKVAFEAIDL-DVIRVIDLNKLEPWDLKdKcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLG 106 69**************************.99**********943444443456*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++ktLvfy+grap+g+ktdW+mheyrl Aco004364.1 107 DSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 *****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-58	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.244	10	159	IPR003441	NAC domain
Pfam	PF02365	2.6E-28	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0010455	Biological Process	positive regulation of cell fate commitment
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MHPCNGTVTV PPGFRFHPTD EELLHYYLRK KVAFEAIDLD VIRVIDLNKL EPWDLKDKCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLGDSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD DESTEVLEEG WVVCRVFKKK NHQRGIPPEA MLEDDEPNLS 180 RPTRSALLDP KHNFNMPSDF TFDASMHLPQ LLSSESSPLP SFMPQQVSMN SLDIECSHNL 240 MKLTNGGASN SHHHLLPQER FNNGDWSRLD KLLASHQQLD QLFNGKLNTP PSHQLIMEMG 300 SSMERFPLHS LVCENDNIMK FPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	8	161	15	167	NO APICAL MERISTEM PROTEIN
4dul_A	2e-48	8	161	15	167	NAC domain-containing protein 19
4dul_B	2e-48	8	161	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00250	DAP	Transfer from AT1G79580	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089353.1	0.0	NAC domain-containing protein 76-like
Swissprot	Q9MA17	1e-105	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A199W1S1	0.0	A0A199W1S1_ANACO; Protein SOMBRERO
STRING	XP_008783883.1	1e-165	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	2e-90	NAC family protein

Link Out ? help Back to Top
Phytozome	Aco004364.1

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]