PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco004240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 379aa MW: 41298.6 Da PI: 8.6964 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aco004240.1 81 FVCEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 158 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Aco004240.1 158 WKCDKCSKRYAVHSDWKAHVKTC 180 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 80 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.28E-7 | 80 | 103 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 5.7E-5 | 81 | 103 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 123 | 153 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.5E-5 | 146 | 179 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.28E-7 | 153 | 178 | No hit | No description |
SMART | SM00355 | 90 | 158 | 178 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MFASAALSNS TSMSEEGSAS SETRAHDFNS LISFLTPTSP SQHLQQSQAK GKKKRSQPGN 60 PDPDAEVVAL SPKTLIATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEGVRK 120 RVYVCPEPSC VHHHPSRALG DLTGIKKHFS RKHGEKKWKC DKCSKRYAVH SDWKAHVKTC 180 GTREYRCDCG TLFSRKDSFV THKAFCDALA EESAKLLTTS SSSTTTTITT NPLILDHPFF 240 PFSSLDPTIF TNPNPNPNLN YNPHPPPLLR PYAFHLATTE AAAAAAPPHL SATSLLQRAS 300 AVGPIITGAA SCHVGCADFD AGGLATWHAG DRLTRDFLGV VAGEEAPGGV RDLLPLTCLD 360 LVTAPHYCAQ VGDHTCTNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-34 | 154 | 223 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 4e-34 | 154 | 223 | 3 | 72 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020104060.1 | 0.0 | protein indeterminate-domain 12-like | ||||
Swissprot | O22759 | 1e-116 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A199VH21 | 0.0 | A0A199VH21_ANACO; Protein indeterminate-domain 12 | ||||
STRING | XP_008788632.1 | 1e-153 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-108 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | Aco004240.1 |
Publications ? help Back to Top | |||
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