PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004054.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 317aa    MW: 35342 Da    PI: 4.8165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004054.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.4e-15116167155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  Aco004054.1 116 QRMTHIAVERNRRRQMNEYLAILRSLMPPS---YVQRGDQASIVGGAINYVKELE 167
                  79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.51E-15114171No hitNo description
Gene3DG3DSA:4.10.280.107.8E-14114171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-18115185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.132115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-12116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-12121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MALEAVVFPQ DIFGYNCKEL YTNMGGIWGN DLANMVVVEE MEMSECEMGG WVGENWNPSS  60
SSLVQNLDEW EINSSSAEVW GVAVEAEGEE AMKAVDGRRK RRRTRSVKNM EEVESQRMTH  120
IAVERNRRRQ MNEYLAILRS LMPPSYVQRG DQASIVGGAI NYVKELEQLL QSLEVQKRLK  180
QVQTDSTSLA SPFANFFAFP QYSSFSGRGG GGGSNSGTVT DNQSAVADIE VTVVESHVNL  240
KVLSKRQPKQ LLKMVAGLQN LRFIPLHLNV TTVDDMVLYS FSLKVADDCH FTSVDEIATT  300
VYQMIGRIEE DAKFSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198102RKRRR
298103RKRRRT
3116127RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104253.10.0transcription factor bHLH94-like
TrEMBLA0A199UE710.0A0A199UE71_ANACO; Transcription factor bHLH96
STRINGXP_010272971.11e-135(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-70bHLH family protein