PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco003993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 419aa MW: 46408.1 Da PI: 4.7629 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 102 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+r+++ +g+W+AeIrdp++ r++lg+f t+eeAa+a++ +++++g Aco003993.1 102 SRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDVEARRIRG 152 79********.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.30E-33 | 102 | 162 | No hit | No description |
Pfam | PF00847 | 3.7E-12 | 102 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-22 | 102 | 160 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 103 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.25 | 103 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-36 | 103 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MCGGAIISDY IPAAAARRAT GQHPWADLKT TKKKKKSAPS RGVADVDDDF EADFEEFDGE 60 SEEDDDVDVD VDVKPFVFTA KSTLSRGFDG HAAKLASQKR KSRYRGIRQR PWGKWAAEIR 120 DPRKGVRVWL GTFNTPEEAA RAYDVEARRI RGKKAKVNFP EAGITSQKRS SKPSAPAATK 180 QNPPSEKLDF TQSFDYMNYP ETKLYSSLAE ELSKPKALPE GAGKNLFSDQ GSNFFDYTDF 240 AWETKVETPE SALISAPSIA NHVESEIPEY GSPRKKMKTC SGDATPTEEN TSLELADDLD 300 FEPYMKLLQF PYIEGSSYDS IDGLFGGEVV QDGSNLVDLW SFDDLPMEGR IDMVGVGLCF 360 VLRQVSCSLF QFSVVGLGFL SCCRMISCSE YRSKAYYGRV SLPVVVVEEA CELDIVMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 104 | 160 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM666117 | 0.0 | KM666117.1 Ananas bracteatus clone 51352b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020104024.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Refseq | XP_020104025.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2H3XIM2 | 1e-104 | A0A2H3XIM2_PHODC; ethylene-responsive transcription factor 1-like | ||||
STRING | XP_008784363.1 | 1e-105 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-43 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Aco003993.1 |