PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003993.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 419aa    MW: 46408.1 Da    PI: 4.7629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003993.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19102152155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a++  +++++g
  Aco003993.1 102 SRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDVEARRIRG 152
                  79********.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.30E-33102162No hitNo description
PfamPF008473.7E-12102152IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22102160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-31103161IPR001471AP2/ERF domain
PROSITE profilePS5103224.25103160IPR001471AP2/ERF domain
SMARTSM003802.0E-36103166IPR001471AP2/ERF domain
PRINTSPR003673.8E-11104115IPR001471AP2/ERF domain
PRINTSPR003673.8E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MCGGAIISDY IPAAAARRAT GQHPWADLKT TKKKKKSAPS RGVADVDDDF EADFEEFDGE  60
SEEDDDVDVD VDVKPFVFTA KSTLSRGFDG HAAKLASQKR KSRYRGIRQR PWGKWAAEIR  120
DPRKGVRVWL GTFNTPEEAA RAYDVEARRI RGKKAKVNFP EAGITSQKRS SKPSAPAATK  180
QNPPSEKLDF TQSFDYMNYP ETKLYSSLAE ELSKPKALPE GAGKNLFSDQ GSNFFDYTDF  240
AWETKVETPE SALISAPSIA NHVESEIPEY GSPRKKMKTC SGDATPTEEN TSLELADDLD  300
FEPYMKLLQF PYIEGSSYDS IDGLFGGEVV QDGSNLVDLW SFDDLPMEGR IDMVGVGLCF  360
VLRQVSCSLF QFSVVGLGFL SCCRMISCSE YRSKAYYGRV SLPVVVVEEA CELDIVMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20104160360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6661170.0KM666117.1 Ananas bracteatus clone 51352b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104024.10.0ethylene-responsive transcription factor 1-like
RefseqXP_020104025.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A2H3XIM21e-104A0A2H3XIM2_PHODC; ethylene-responsive transcription factor 1-like
STRINGXP_008784363.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-43related to AP2 12