PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003952.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

AP2

Protein Properties

Length: 584aa MW: 62777.3 Da PI: 7.2312

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003952.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.6	2e-10	293	349	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ + +Aa+a++ a++k++g Aco003952.1 293 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDNEGKAARAYDLAALKYWG 349 78*****************433.44555535555.7799956***********98 PP
2	AP2	45.9	1.4e-14	394	443	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Aco003952.1 394 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 443 9*************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.9E-7	293	349	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.4E-13	293	359	IPR016177	DNA-binding domain
CDD	cd00018	1.18E-15	293	356	No hit	No description
PROSITE profile	PS51032	16.305	294	357	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-10	294	358	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-19	294	363	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-6	295	306	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-17	392	453	IPR016177	DNA-binding domain
CDD	cd00018	4.14E-24	392	453	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.2E-18	393	451	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.177	393	451	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-34	393	457	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-9	394	443	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-6	433	453	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MDMSTWLGFS LSSTKGESSS YCEEPLSNGG EGGGGGGGGG GVNGGGGGDV GFASPPLHAM 60 PLRSRESICF MEQGAFRPST DWKYGSAMST QSITSNEESK GPKLEDFLGS YIETANEDHQ 120 GHHHEPITNL HDMYYNGHGG LNINVNMPPS FSPQEGDADQ EDAQSAFQFM QSFHNHPNLN 180 PQFLVPTPNL YPNPSTNPSP AGSVYSVGAD GSSTSISGIK SWLRQNPYLP EKQIVEAGEA 240 NVRSLTLSMS PGSHFVPGAI MCADDDPKSS AAKCSAREQV PRKSIETFGQ RTSQYRGVTR 300 HRWTGRYEAH LWDNSCRKEG QTRKGRQGGY DNEGKAARAY DLAALKYWGP TTHINFSLST 360 YEKELEEMKH MTRQEFVAHL RRRSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY 420 LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DISKYDVKRI CLSTRLIGGD LAKRSPTASD 480 SANGGPQPLA VANPTAASVG GGCGATNDLS GSPRVSDLHH SGYGALPNAF CNASPVKFEG 540 GENSRNGGSE VGGLNWMAAA AAPAGLPMTA RHRHLPMFAL WNE*

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MDMSTWLGFS LSSTKGESSS YCEEPLSNGG EGGGGGGGGG GVNGGGGGDV GFASPPLHAM  60
PLRSRESICF MEQGAFRPST DWKYGSAMST QSITSNEESK GPKLEDFLGS YIETANEDHQ  120
GHHHEPITNL HDMYYNGHGG LNINVNMPPS FSPQEGDADQ EDAQSAFQFM QSFHNHPNLN  180
PQFLVPTPNL YPNPSTNPSP AGSVYSVGAD GSSTSISGIK SWLRQNPYLP EKQIVEAGEA  240
NVRSLTLSMS PGSHFVPGAI MCADDDPKSS AAKCSAREQV PRKSIETFGQ RTSQYRGVTR  300
HRWTGRYEAH LWDNSCRKEG QTRKGRQGGY DNEGKAARAY DLAALKYWGP TTHINFSLST  360
YEKELEEMKH MTRQEFVAHL RRRSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY  420
LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DISKYDVKRI CLSTRLIGGD LAKRSPTASD  480
SANGGPQPLA VANPTAASVG GGCGATNDLS GSPRVSDLHH SGYGALPNAF CNASPVKFEG  540
GENSRNGGSE VGGLNWMAAA AAPAGLPMTA RHRHLPMFAL WNE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020105202.1	0.0	AP2-like ethylene-responsive transcription factor AIL1 isoform X1
Swissprot	Q1PFE1	1e-123	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	A0A199URX9	0.0	A0A199URX9_ANACO; AP2-like ethylene-responsive transcription factor AIL1
STRING	XP_008787841.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP797	38	151

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-111	AP2 family protein

Link Out ? help Back to Top
Phytozome	Aco003952.1

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]