PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003945.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YA
Protein Properties Length: 356aa    MW: 38930.2 Da    PI: 9.3912
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003945.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.83.8e-33205261158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq Rakle+e+kl  k+rkpylheSRh hA++R+RgsgGrF
  Aco003945.1 205 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKNRKPYLHESRHLHAMKRARGSGGRF 261
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-38203264IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.222204264IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.8E-29206261IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-24207229IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860209229IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-24238261IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPINNVKAFD MQNITGKATE GSSVHSASIN VLQNCQSWWN SSSMFHFQQP SYPKTLCVNK  60
EFVAEHGNQI KQVGHQMPDQ DSSSTQSTSQ SNQEVSGRSE GSSLNEQQHT STQSGISYSH  120
GNADSYGKRD DGQMKSVLSL GNPEAAFPPQ KLDYSQSFAC VPYPYADPCY GNVLTAYGAH  180
AIIHPQMVGM APSTRVPLPL EPASEEPIYV NAKQYHAILR RRQLRAKLEA ENKLVKNRKP  240
YLHESRHLHA MKRARGSGGR FLNTKQLQQQ QQQPQSDNTK LLGLNFLSEN GPTGSSATPT  300
SSDSTSMSNS GGVYMQQDNL GFAASNLHSH ARRGIQDGSN KIANGGSHVR VPIMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21205273270NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104627.10.0nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A199VU711e-164A0A199VU71_ANACO; Nuclear transcription factor Y subunit A-5 (Fragment)
STRINGXP_008787861.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-41nuclear factor Y, subunit A3