PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003917.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family YABBY
Protein Properties Length: 191aa    MW: 21453.8 Da    PI: 8.8202
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003917.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY139.24.7e-4311451162
        YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                  +d++s se++Cyv+C++Cnt+lav vP + ++ +vtv+CGhC +l  ++ + ++q +  ++h          +++ +++     n+ ++ ++s s+ss
  Aco003917.1   1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRIMDTVTVKCGHCNNLSFLSPRPMVQPVCPTDH----------QQMCFQGPC---NDCRRLQPSPSNSS 85 
                  578999**************************************987655555555555555..........333333322...22222222222222 PP

        YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                       ++++ ++++p v++PPek+ r Psaynrf+keeiqrika  Pdi hreafs+aaknWa 
  Aco003917.1  86 ----MSSEQTTTKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAVKPDIPHREAFSMAAKNWAK 145
                  ....234556677889**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.5E-516146IPR006780YABBY protein
SuperFamilySSF470952.49E-892147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-5100147IPR009071High mobility group box domain
CDDcd013901.33E-5107148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDLVSPSEHL CYVRCTYCNT VLAVGVPCKR IMDTVTVKCG HCNNLSFLSP RPMVQPVCPT  60
DHQQMCFQGP CNDCRRLQPS PSNSSMSSEQ TTTKAPFVVK PPEKKHRLPS AYNRFMKEEI  120
QRIKAVKPDI PHREAFSMAA KNWAKCDPRC STVSTSENNV AVRAMSFSHE RSNGLPINSF  180
DVFKPMERKD *
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105063.11e-140protein DROOPING LEAF isoform X1
SwissprotQ76EJ02e-93YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A199W3U61e-112A0A199W3U6_ANACO; Protein DROOPING LEAF
STRINGXP_008785629.12e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-54YABBY family protein