PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco003777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 25257.5 Da PI: 9.5483 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 31 | 84 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F ++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Aco003777.1 31 KKRRLNDEQVKFLELSFGEERKLETGRKVQLAAELGLDPKQVAVWFQNRRARHK 84 56789***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 115.7 | 2.7e-37 | 31 | 113 | 2 | 84 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 kkrrl++eqvk+LE sF ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+ktkq+E +y++Lk+a+da + ++++Le+ev Aco003777.1 31 KKRRLNDEQVKFLELSFGEERKLETGRKVQLAAELGLDPKQVAVWFQNRRARHKTKQIEDEYSKLKSAHDAAVLHKCHLENEV 113 9*******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.066 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-16 | 29 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.14E-16 | 30 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.95E-15 | 31 | 87 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 31 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 32 | 93 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.9E-6 | 57 | 66 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.9E-6 | 66 | 82 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDDVLRTGET RRRTRRRRKR ARGEGSGEAS KKRRLNDEQV KFLELSFGEE RKLETGRKVQ 60 LAAELGLDPK QVAVWFQNRR ARHKTKQIED EYSKLKSAHD AAVLHKCHLE NEVLASACLP 120 ACLPTIHHIN TNTTDRPLSA QVLKLKERLS EAEAEIRKLT AGITGASGGG GGGGGGSSSP 180 SSSFSTVTHR PLVNGEFGVE GETDFMYIYN DYTYNNYMMD LVGLYGM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 19 | RRTRRRRKR |
2 | 15 | 33 | RRRKRARGEGSGEASKKRR |
3 | 17 | 33 | RKRARGEGSGEASKKRR |
4 | 78 | 86 | RRARHKTKQ |
5 | 166 | 176 | SGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM666292 | 1e-120 | KM666292.1 Ananas bracteatus clone 51572j microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020105030.1 | 1e-101 | homeobox-leucine zipper protein HOX12-like isoform X1 | ||||
Refseq | XP_020105031.1 | 1e-101 | homeobox-leucine zipper protein HOX12-like isoform X2 | ||||
Refseq | XP_020105032.1 | 1e-101 | homeobox-leucine zipper protein HOX12-like isoform X3 | ||||
Swissprot | Q7XI85 | 8e-54 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A199V381 | 1e-100 | A0A199V381_ANACO; Homeobox-leucine zipper protein HOX14 | ||||
STRING | XP_008795628.1 | 6e-64 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 7e-38 | homeobox 53 |
Link Out ? help Back to Top | |
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Phytozome | Aco003777.1 |
Publications ? help Back to Top | |||
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