PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003657.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YC

Protein Properties

Length: 279aa MW: 30479.5 Da PI: 9.5833

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003657.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	166.2	4.1e-52	50	154	1	98
NF-YC 1 qlksfwekq.......iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++diaaa+trtd+fdf Aco003657.1 50 QLQMFWSYQrqemmssALAASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDIAAAITRTDVFDF 147 89***99766533333568************************************************************************* PP NF-YC 92 lvdivpr 98 lvdivpr Aco003657.1 148 LVDIVPR 154 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.01E-32	29	148	IPR009072	Histone-fold
Pfam	PF00808	1.5E-20	76	139	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.9E-37	77	154	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MRENNHPFFS KETDDTEWRI KGRRRRRRIR RNRRQQLNMH VQVQGQQQQQ LQMFWSYQRQ 60 EMMSSALAAS DFKNHQLPLA RIKKIMKADE DVRMISAEAP VLFAKACELF ILELTIRSWL 120 HAEENKRRTL QRNDIAAAIT RTDVFDFLVD IVPRPGPDDP PPKDDADAAA AAAAAASHAL 180 SPVGFVGAGL AAAAAPGVPY YYPPPQGMMI GQPAVPGIDP TAYAHRPAAG APGTAQGWPP 240 VWPPGAAEDG GYGRGQEVYV GHSPTNTTTS AATPPPGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-50	69	154	10	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	27	RIKGRRRRRR
2	22	29	RRRRRRIR
3	22	30	RRRRRRIRR
4	23	30	RRRRRIRR
5	126	132	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666752	0.0	KM666752.1 Ananas bracteatus clone 52124b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020106902.1	1e-169	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit C-1
Swissprot	Q9FMV5	7e-71	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A199VUJ8	1e-176	A0A199VUJ8_ANACO; Nuclear transcription factor Y subunit C-4
STRING	XP_008798937.1	2e-79	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7345	35	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	6e-59	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Aco003657.1

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]