PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003598.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 275aa MW: 31348.3 Da PI: 8.6738

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003598.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	44	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +W++ Ed+ l +vk++G +W+ I r ++ gR++k+c++rw ++l Aco003598.1 44 KVPWSPHEDKMLRALVKKHGAQSWSIICRNIP-GRSAKSCRLRWCNHL 90 579***************************.***********96 PP
2	Myb_DNA-binding	56	9.1e-18	98	138	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eEd +++++++++ +g W+tIar+m+ gR+++ +k+rw+ Aco003598.1 98 PFTPEEDSKIIELHRKYHNG-WATIARHMP-GRSDNAIKNRWN 138 89****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.652	39	94	IPR017930	Myb domain
SMART	SM00717	6.4E-15	43	92	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	44	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.46E-30	44	137	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-18	46	93	IPR009057	Homeodomain-like
CDD	cd00167	1.77E-13	46	90	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-21	94	143	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-15	95	143	IPR001005	SANT/Myb domain
CDD	cd00167	5.24E-12	98	141	No hit	No description
PROSITE profile	PS51294	17.905	98	145	IPR017930	Myb domain
Pfam	PF00249	2.8E-15	98	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MALSKHTVLT SSPSSAVCAS EAKKEKGSQV PWSPPDAKKD KGSKVPWSPH EDKMLRALVK 60 KHGAQSWSII CRNIPGRSAK SCRLRWCNHL LPGLNFKPFT PEEDSKIIEL HRKYHNGWAT 120 IARHMPGRSD NAIKNRWNCT LKNRQRHEHE QPTKRKRSDD DHDDDGFGSK VAESWLPPKT 180 PQWEEIEPAE ICEPGCVSQK PPPPLELNFL AQDFSRWKKQ VFDRQRDFTG FKFDHGIDDP 240 MTALTLGYPG TPTESYSSDF SDEGRWKMES AIEY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	44	144	7	107	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107289.1	0.0	transcription factor MYB44-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4960	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	2e-38	myb domain protein 70

Link Out ? help Back to Top
Phytozome	Aco003598.1