PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003514.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 415aa    MW: 47302.2 Da    PI: 6.4303
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003514.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.22e-27104185286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+g+ rsp++C++kw+nl k++kk k+++k+     s +++y+++l+
  Aco003514.1 104 WVQEETRSLISFRREMDGLFNTSKSNKHLWEQISAKMREKGYDRSPTMCTDKWRNLLKEFKKAKHQSKGS---GSAKMSYYKELD 185
                  *******************************************************************984...55689*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.72296160IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-497162IPR009057Homeodomain-like
SMARTSM007179.6E-5100162IPR001005SANT/Myb domain
CDDcd122036.15E-29102167No hitNo description
PfamPF138373.1E-22103187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSLLTLDQFL SQPLLRCYRR REEEGEEEEA GARKSMYLAE KPRPVDYYKE EARDMMIQVV  60
GNGGLPPQQP PPPPPPPQPQ QMIFTESSGE DHEIKAPKKR AETWVQEETR SLISFRREMD  120
GLFNTSKSNK HLWEQISAKM REKGYDRSPT MCTDKWRNLL KEFKKAKHQS KGSGSAKMSY  180
YKELDELLKE RSKNAPYKSP TASKVDSYLQ FSDKGFEDTA IPFGSVEAGG RSTLSVERHL  240
ESERHPLAIT AADAVATNGV NPWNWRDSSA NGGDNHPSYV GRVILVKWGE YTKRIGIDGT  300
AEAIKEAIKS AFGLRTKRAF WLEDEDDVVR SFDRDMPLGT YTLHLDEGIS IKVCMYDDTD  360
RIPVQTEEKT LYTEKDFCDF LSRRGWTGLR ELSGFRSVDT LDELRPGAMY QGIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-4998183186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107077.10.0trihelix transcription factor GT-1-like
SwissprotQ9FX531e-177TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A199V5Z30.0A0A199V5Z3_ANACO; Trihelix transcription factor GT-1
STRINGXP_008812414.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-178Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]