PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco003476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | AP2 | ||||||||
Protein Properties | Length: 752aa MW: 80852.7 Da PI: 6.8843 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35 | 3.6e-11 | 285 | 341 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Aco003476.1 285 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 341 57*******************4444.2455535555.779999**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-14 | 285 | 351 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-8 | 285 | 341 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.50E-19 | 285 | 351 | No hit | No description |
SMART | SM00380 | 1.1E-22 | 286 | 355 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.319 | 286 | 349 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-12 | 286 | 350 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.51E-18 | 384 | 485 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-5 | 384 | 418 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.4E-19 | 385 | 489 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.142 | 385 | 483 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-4 | 385 | 418 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-6 | 458 | 484 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MASMNNWLGF SLSPQELQPS HDSHQTQHPS PSLISGADDV SADCYGLSAA AADSSLAPPP 60 LSIPTLRPDG PFCIGHHQQD WSMKSSMDVD NGPPKLEDFL SGHSFSEHDG RKIPSDYMFS 120 NCSINITTLT QDNNHCGLFN NNNNNNTNNS NSGGGNSNSN STIGLSMIKN WLRSQPVPHN 180 QHSDMGHKSG DGGGGGGGGC NALVGSVDHV ALGGGRGGSQ SLSLSMSTGS QSSSPLPLMG 240 SGGGGESSSS ENKNKGSVGS GVDEQSGAIE AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE 300 AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SNYEKEVEEM 360 KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSKSN 420 PPQNKVNSDS NISVPLSLSF EYSNRLKKIP TKNPNAGTQE EAAEAYDIAA IKFRGLNAVT 480 NFDMSRYDVK SILESSTLPI GGAAKRLKDV SEHTEESVDG LRMITTDGDN RFNSQITEGI 540 SGSTTAYGWP GIAFAQAQPV GMHYPYPQQP VRGWCKPEHE GMAVAAAAAQ SLQELQQLHL 600 GSSTHNFFQR PPPPPLMNLD SSPSMEHSTG SNSVLYSGSY QGVVGADNCG YAMPISTMLV 660 DQSQNNNHQG SSSYGESGHE GNMHVGVDPY GGRNVYFMNQ QTMGGLKENG FEQESNGCNN 720 WVQNPTQAIA PRGNNVAVCH GAPLFTVWND A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606604 | 5e-50 | AL606604.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence. | |||
GenBank | AL731638 | 5e-50 | AL731638.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence. | |||
GenBank | AP014960 | 5e-50 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 5e-50 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020107273.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A199V3T7 | 0.0 | A0A199V3T7_ANACO; AP2-like ethylene-responsive transcription factor BBM2 | ||||
STRING | XP_008804192.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-116 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco003476.1 |