PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003445.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 1305aa MW: 142499 Da PI: 6.313

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003445.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.7	1.3e-29	537	588	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Aco003445.1 537 AEKNISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 588 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	522	608	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-26	540	588	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-22	789	880	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.1E-23	793	875	No hit	No description
Pfam	PF00564	1.7E-17	796	877	IPR000270	PB1 domain
PROSITE profile	PS51745	24.674	796	878	IPR000270	PB1 domain
SMART	SM00666	4.5E-22	796	878	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1305 aa Download sequence Send to blast
MEGFTPLDCG AMESPVLEDP FTFSALMNYD GYSEIYSPAI ADQIFSALTY SAAQDVPAIW 60 PSFASPDSAV QGRDVAIGNA NSSSTAYSGC RDNMGPQKSN SHFGLSANSP FVDTSSVPRT 120 IAGGSLPEKM LTALSLFKKS SGGGILAQVW MPIKQGDNHV LSTCEQPFLL DQILAGYREV 180 SRQFTFSAKE APGMFPGLPG RVFMSGMPEW TSNVLYYDGF EYLRMEYALT HRVRGSLAMP 240 VFDSKEGSCC AVLELVTMSE KPDFDAEMDS VCNALEEVNL RTVKARPLLQ NLTKNQKSAV 300 TEILDILRVV CHAHMLPLAI TWIPISSDVG NSEVFVKANG RQINSDSRNK NMLCIQESAC 360 YVNDLKMQGF LHACAEHRLE KGKGIAGKAL QSNQPFFCSD VKACNIREYP LAHHARKFNL 420 GAAVAIRLRS TYTGDDDYIL EFFLPVNHKS SEEQQLLLNN LSSTMQKLCR SLRTISDAEL 480 AGIDAHEDHI HKGKYDPAVK TPFEDQNIPP DERGGDVQPE KLKSSLMRHA EKKRSLAEKN 540 ISLSVLQQYF SGSLKDAAKS IGVCPTTLKR ICRQHGISRW PSRKINKVNR SLKKIQKVIN 600 SVQGVEGSLK YDPATGCLVA AVSPTQNPPL KTIAPPSCDS VLAASSRNNE PELSVLKLEH 660 DCSHNNDHEK GEFGLLVENR EESCRTTPPD SGILQYANSG GMSRLPLFSG GVLSDSHVTK 720 EIGCPEVPHK IDYNDDGIVE HSNPSSSKID YNDDGIVEHS NPSSSSMTDS SSGSASSHPT 780 FKKKPKSASL NENSPTITVK AIYKNDMVRF KFLPSGGYQQ LLEEIAKRFK LLNGTFQLKY 840 RDDEEEWVIL ASDSDLQECL EVLENIESRR VKVLVRDIPC VVGSSPSSSC LLMEHPTLLH 900 QHCKPLLRHL VLPPPHSPPP HHRRRLCRQY PNRIASAADL EHLRRPVAAP PRQAHVDPHR 960 LFPARRGDPL LLYRVPHHHP PRPRDPPQHV FKMRAIALLA LAVLRELPQP HHRVPPPHVR 1020 RRPRPRTPDP LPHLLVDRLE PVLDVGLEEP PVDEDRVADD EDRVVLREEP SRDRALGAER 1080 GDSGRETLPK LGLDPGEGSG DPPEGVPRRG EVGDEALHGE PRAEPPRPRL ELVEPRRGGV 1140 AEVAGDVHDL VVAEHGEEGA AVARGVELEA VEEVEEADLV AAAVEHVADL DGDGGAAAPP 1200 GGAGGGGGGL GEAGEGEGLA GLVEVTMEVP DGDEARSGGE TGRGRIRVRV SVRVRVRVSG 1260 EEEAANAVVN EGVDEGGDQW GNSSAYRTDR IGRFGRPGCR GARV*

Sequence ? help Back to Top

Protein Sequence Length: 1305 aa Download sequence Send to blast

MEGFTPLDCG AMESPVLEDP FTFSALMNYD GYSEIYSPAI ADQIFSALTY SAAQDVPAIW  60
PSFASPDSAV QGRDVAIGNA NSSSTAYSGC RDNMGPQKSN SHFGLSANSP FVDTSSVPRT  120
IAGGSLPEKM LTALSLFKKS SGGGILAQVW MPIKQGDNHV LSTCEQPFLL DQILAGYREV  180
SRQFTFSAKE APGMFPGLPG RVFMSGMPEW TSNVLYYDGF EYLRMEYALT HRVRGSLAMP  240
VFDSKEGSCC AVLELVTMSE KPDFDAEMDS VCNALEEVNL RTVKARPLLQ NLTKNQKSAV  300
TEILDILRVV CHAHMLPLAI TWIPISSDVG NSEVFVKANG RQINSDSRNK NMLCIQESAC  360
YVNDLKMQGF LHACAEHRLE KGKGIAGKAL QSNQPFFCSD VKACNIREYP LAHHARKFNL  420
GAAVAIRLRS TYTGDDDYIL EFFLPVNHKS SEEQQLLLNN LSSTMQKLCR SLRTISDAEL  480
AGIDAHEDHI HKGKYDPAVK TPFEDQNIPP DERGGDVQPE KLKSSLMRHA EKKRSLAEKN  540
ISLSVLQQYF SGSLKDAAKS IGVCPTTLKR ICRQHGISRW PSRKINKVNR SLKKIQKVIN  600
SVQGVEGSLK YDPATGCLVA AVSPTQNPPL KTIAPPSCDS VLAASSRNNE PELSVLKLEH  660
DCSHNNDHEK GEFGLLVENR EESCRTTPPD SGILQYANSG GMSRLPLFSG GVLSDSHVTK  720
EIGCPEVPHK IDYNDDGIVE HSNPSSSKID YNDDGIVEHS NPSSSSMTDS SSGSASSHPT  780
FKKKPKSASL NENSPTITVK AIYKNDMVRF KFLPSGGYQQ LLEEIAKRFK LLNGTFQLKY  840
RDDEEEWVIL ASDSDLQECL EVLENIESRR VKVLVRDIPC VVGSSPSSSC LLMEHPTLLH  900
QHCKPLLRHL VLPPPHSPPP HHRRRLCRQY PNRIASAADL EHLRRPVAAP PRQAHVDPHR  960
LFPARRGDPL LLYRVPHHHP PRPRDPPQHV FKMRAIALLA LAVLRELPQP HHRVPPPHVR  1020
RRPRPRTPDP LPHLLVDRLE PVLDVGLEEP PVDEDRVADD EDRVVLREEP SRDRALGAER  1080
GDSGRETLPK LGLDPGEGSG DPPEGVPRRG EVGDEALHGE PRAEPPRPRL ELVEPRRGGV  1140
AEVAGDVHDL VVAEHGEEGA AVARGVELEA VEEVEEADLV AAAVEHVADL DGDGGAAAPP  1200
GGAGGGGGGL GEAGEGEGLA GLVEVTMEVP DGDEARSGGE TGRGRIRVRV SVRVRVRVSG  1260
EEEAANAVVN EGVDEGGDQW GNSSAYRTDR IGRFGRPGCR GARV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661266	6e-66	KM661266.1 Ananas bracteatus clone 42880 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107639.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A199V3R6	0.0	A0A199V3R6_ANACO; Protein NLP2 (Fragment)
STRING	XP_008800674.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Aco003445.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]