PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco003401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | DBB | ||||||||
Protein Properties | Length: 198aa MW: 21488.8 Da PI: 5.9164 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1.1e-05 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ + + e+ C ++ lC C ++ H H +vp Aco003401.1 4 QCDVCARAEAAVLCCADEAALCWGCDDAVHAAnklagkHHRVP 46 7*****************************6688999977766 PP | |||||||
2 | zf-B_box | 31.7 | 3.2e-10 | 59 | 99 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ ++ek +fC +++ llC++C ++ H H Aco003401.1 59 NPTCDICQEKAGYFFCLEDRALLCRNCDVSVHTAspyvssH 99 799****************************9555666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.025 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.48E-4 | 3 | 45 | No hit | No description |
SMART | SM00336 | 1.1E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 2.7E-5 | 53 | 97 | No hit | No description |
PROSITE profile | PS50119 | 9.286 | 57 | 104 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.4E-14 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-8 | 59 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.38E-7 | 62 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MKIQCDVCAR AEAAVLCCAD EAALCWGCDD AVHAANKLAG KHHRVPLLPP TTPPSAPTNP 60 TCDICQEKAG YFFCLEDRAL LCRNCDVSVH TASPYVSSHQ RFLITGVRVA LQHYLTNANN 120 NSSSSNTNNS SSSNCDKPLS SQPRSTSETA KKLRGDPTAS FGREEVEAFR SQWPWNEILE 180 NVDFDQYYGL SEPGSSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091891 | 1e-35 | FP091891.1 Phyllostachys edulis cDNA clone: bphylf050h06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020107577.1 | 1e-146 | B-box zinc finger protein 22-like | ||||
Refseq | XP_020107579.1 | 1e-146 | B-box zinc finger protein 22-like | ||||
Swissprot | Q9SYM2 | 2e-54 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A199UGI0 | 1e-143 | A0A199UGI0_ANACO; B-box zinc finger protein 22 | ||||
STRING | GSMUA_Achr11P12670_001 | 5e-83 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-49 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco003401.1 |