PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003398.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ZF-HD
Protein Properties Length: 306aa    MW: 32828.9 Da    PI: 8.4394
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003398.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.55.9e-3285141360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  +v+Y+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC CHRnFHR+e e e
  Aco003398.1  85 AVKYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKEAEGE 141
                  689*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-2986138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-3087137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2187136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13788137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.48E-19225298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-30231299IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-26237293IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDLSGHEGEI PIPISSSYVG GGHGHGHSII HESTPSLHHP SNGPPPPPHP PPPPLSSAAA  60
AADDHHHHQH HHYYNNTNAP KKGAAVKYRE CLKNHAASIG GNATDGCGEF MPSGEEGTLE  120
ALKCSACSCH RNFHRKEAEG EAAAAAACDC YHSLNKGGRK MLMGQKGLLI SGPDHPHHHA  180
FGSYGPAHAG NSFIPRPHHV GMIMPLGAMQ SSESDDVEGA VVGGGGGGRA LPHHAAKKRF  240
RTKFSQDQKE KMMGFAERVG WRIQRVEESV VQQFCQEIGV KRRVLKVWMH NNKHSLAKKN  300
PLPLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242382951875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106588.10.0zinc-finger homeodomain protein 4-like
RefseqXP_020106589.10.0zinc-finger homeodomain protein 4-like
TrEMBLA0A2H3Z6U71e-116A0A2H3Z6U7_PHODC; zinc-finger homeodomain protein 4-like
STRINGXP_008808961.11e-117(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-64homeobox protein 21