PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003309.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 310aa    MW: 35046.6 Da    PI: 9.3456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003309.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
      Aco003309.1 18 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                     899*****************************.***********996 PP

2Myb_DNA-binding591.1e-1871113246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
      Aco003309.1  71 RPFTEEEEERLLAAHRVHGNK-WALIARLFP-GRTDNAVKNHWHV 113
                      69*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.311364IPR017930Myb domain
SuperFamilySSF466891.09E-2916111IPR009057Homeodomain-like
SMARTSM007172.5E-141766IPR001005SANT/Myb domain
PfamPF002494.1E-171863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-271971IPR009057Homeodomain-like
CDDcd001675.39E-142162No hitNo description
PROSITE profilePS5129427.4765119IPR017930Myb domain
SMARTSM007176.2E-1669117IPR001005SANT/Myb domain
PfamPF002491.4E-1570112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2272117IPR009057Homeodomain-like
CDDcd001679.08E-881112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGSLSMANGS DDSRSCPRGH WRPGEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINK RPFTEEEEER LLAAHRVHGN KWALIARLFP GRTDNAVKNH WHVIMARRHR  120
ERSRLFSKRP HSDQFLTSSD TAMSGLFALS SASDKRNFTD SSQPFHFDFG SSSKDRPAFG  180
VLPSNSSFYW AFSRSNVPST PQVFGANGDV YSHKYNCSIL ESSDYYDRSL RANYDPISKN  240
FGANGIRFSS SRERITGNEA SDSHELLTLG NNSSSLNLRT NNDHKDESDE SVKQKDVPFI  300
DFLGVGITS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32181187107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107195.10.0transcriptional activator Myb-like
TrEMBLA0A199UKT90.0A0A199UKT9_ANACO; Transcription factor MYB44
STRINGXP_008795321.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-64myb domain protein 52