PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003270.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ZF-HD

Protein Properties

Length: 299aa MW: 31402.3 Da PI: 11.4343

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003270.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.4	9.3e-30	23	73	5	56
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 rY+eC++NhAa++Gg+a+DGCgEfmp g+eg+ +alkCaACgCHRnFHRr+ Aco003270.1 23 RYRECMRNHAAAIGGQAYDGCGEFMPG-GAEGSLEALKCAACGCHRNFHRRN 73 8***********************9.999*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	2.4E-27	23	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.9E-27	23	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.207	24	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-16	27	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGKGRGEVGA AAEGGGGGAG GGRYRECMRN HAAAIGGQAY DGCGEFMPGG AEGSLEALKC 60 AACGCHRNFH RRNGGADARR AQIAYGWDQR KPIRGRAPPF PRSSPLAPLP APYHAIAPPR 120 RPPLATQHQH TTSTSTPRRT NAGDRQRGRV DDPPPRRERS GRGGDRASRE GASAPSSTAG 180 QKRRCSAFAE KRGVAIKKHD VRGASSSSTS RIRVDTPPST GCISGCTTTR AHLASPSPPH 240 PPLSTPLLLP LHPHRAAVPP PPRRAPNSAA AAPPLLRHPS LKLQLSIEKD CDVFNNNY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	159	PPPRRERS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107239.1	1e-154	zinc-finger homeodomain protein 2-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	3e-20	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Aco003270.1