PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003262.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 277aa MW: 30213.1 Da PI: 8.1056

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003262.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Aco003262.1 14 KGAWTKEEDQRLIAYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.1	9.7e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ Aco003262.1 67 RGNFTEEEDELIIKLHGLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.661	9	61	IPR017930	Myb domain
SMART	SM00717	1.3E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.11E-30	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.92E-11	16	61	No hit	No description
PROSITE profile	PS51294	29.512	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.72E-14	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHGLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRG 120 LDPQTHRPLN AVSPSPPPPP SLFSAAAAAA AAQKHESPIV PDVIVAAAVP KAEAAYSTDD 180 GHSSGGEAPT QHYDLDLNLD LSISLPSYNY SPRRSPQLET VSNNSTCTGA GTASAAYAQS 240 VCLCYHLGFQ SGDACTCQAI PNQHIFRYIR PLEDAQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661585	1e-147	KM661585.1 Ananas bracteatus clone 44075a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020106441.1	0.0	myb-related protein 308-like
Swissprot	P81393	8e-96	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A199UL98	0.0	A0A199UL98_ANACO; Myb-related protein 308
STRING	XP_008783376.1	1e-116	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-87	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Aco003262.1

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]