PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003204.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 296aa    MW: 32561.8 Da    PI: 9.6175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003204.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-1389132855
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Aco003204.1  89 TERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 132
                  7*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.04381131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1583144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1486142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-1486136No hitNo description
SMARTSM003531.3E-989137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1089132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSQEGDGGGG QGGFPWENPQ WAFSNSDNSG SGRNDPKTGT RPVESTTNSP TNQKDPGERK  60
RNRPGPSKSS SSKGVGGVGD SDHELHIWTE RERRKKMRNM FSNLHALLPQ LPPKADKSTI  120
VDEAVNYIKT LQQSLQKLRK KKLDRLRGVV LSDPSSSSIV GFNTANIADP TREGFMAEQG  180
KKWAAMSSPT ALSIPHFPFC FQTWSTPNVV LSVAGDDAHI SICCPKKPGL FTAALHVMEK  240
HKLEVVSAQV SSDYFRSMYM IHARATRVSD QFPETLMIEE IYKLAVGEMI LWIST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106376.10.0transcription factor bHLH95
TrEMBLM0TYN71e-122M0TYN7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P08780_0011e-123(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-38bHLH family protein