PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003106.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YC
Protein Properties Length: 184aa    MW: 20789.5 Da    PI: 6.237
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003106.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.32.3e-53501531101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rtd+fdflvdi
  Aco003106.1  50 QLQLFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTDVFDFLVDI 147
                  89*****99999************************************************************************************** PP

        NF-YC  96 vprdel 101
                  vpr+e 
  Aco003106.1 148 VPREEG 153
                  ***985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.51E-3234144IPR009072Histone-fold
PfamPF008083.0E-2172135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.3E-3773150IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDQKSHGTPP PVIGVGTPVA YPAAAAAAPY QAYHHLYQQQ QQQQQQQQQQ LQLFWADQYR  60
EIEQTTDFKN HNLPLARIKK IMKADEDVRM IAAEAPVVFA RACEMFILEL THRGWAHAEE  120
NKRRTLQKSD IAAAIARTDV FDFLVDIVPR EEGKDDSIPR PIGAPAADPL TYYYVQQPPP  180
PQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5658150395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614941e-119AK361494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141P02.
GenBankAK3722951e-119AK372295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2149D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091306.11e-133nuclear transcription factor Y subunit C-6-like
RefseqXP_020091307.11e-133nuclear transcription factor Y subunit C-6-like
RefseqXP_020091308.11e-133nuclear transcription factor Y subunit C-6-like
SwissprotQ9XE331e-69NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A199ULP51e-131A0A199ULP5_ANACO; Nuclear transcription factor Y subunit C-2
STRINGXP_008802191.13e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-62nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]