PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003091.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CO-like
Protein Properties Length: 403aa    MW: 44330.8 Da    PI: 5.4896
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003091.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.8e-07345440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 + C+ ++e++  ++C+++  +lC +C  + H+       Ht++
  Aco003091.1  3 PLCDFCGEQRPMIYCQSDAACLCLSCDRNVHSAnalsrrHTRT 45
                 78*****************************657888889876 PP
2zf-B_box25.82.2e-084790542
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  C++++ ++++  C   ++ lC +C  ++H+g      H+++p+
  Aco003091.1 47 LCDRCNTQPASVRCIVENVSLCLNCDRNGHNGsvsapaHKTQPI 90
                 7*****************************99********9987 PP
3CCT66.19.8e-23345388144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R+ a++RYkeK+ktRkFeKkirY+sRKa+A+ R+RvKGrFvk+ 
  Aco003091.1 345 RDTAITRYKEKKKTRKFEKKIRYASRKARADVRKRVKGRFVKAG 388
                  899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-12147IPR000315B-box-type zinc finger
PROSITE profilePS501199.599147IPR000315B-box-type zinc finger
PfamPF006433.8E-5345IPR000315B-box-type zinc finger
CDDcd000215.22E-7347No hitNo description
PROSITE profilePS501199.4714390IPR000315B-box-type zinc finger
CDDcd000210.001254790No hitNo description
PfamPF062033.4E-17345387IPR010402CCT domain
PROSITE profilePS5101715.428345387IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAPLCDFCGE QRPMIYCQSD AACLCLSCDR NVHSANALSR RHTRTLLCDR CNTQPASVRC  60
IVENVSLCLN CDRNGHNGSV SAPAHKTQPI HRYSGCPSAE ELSRIWSFVR EIPPVEDPNC  120
EQGFGLMRID ENSVSDMSGS AENYSGSDVA STNKIGDLIN VDKINPWIAS SSRVAVSCTG  180
AKDLEFCKDN MYEDFIMDGV DLTFENYEEL LGVSHTQTEQ IFDDAGIDSF FETKEMSAAN  240
SNYHCEIAAE VCDMAYIPGK PTHAACIKAV SPDSVMSSPV GKVDSSLCIP VRQARSSLSL  300
SFSNLTGESS AGDYQDCGMS SMLFMGEPSW YPTGPESSSL PGTSRDTAIT RYKEKKKTRK  360
FEKKIRYASR KARADVRKRV KGRFVKAGEA YDYDPLCETR SY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6644259e-78KM664425.1 Ananas bracteatus clone 49274b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090501.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_020090502.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_020090503.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
TrEMBLA0A199UMD70.0A0A199UMD7_ANACO; Zinc finger protein CONSTANS-LIKE 10
STRINGXP_008803173.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-90B-box type zinc finger protein with CCT domain