PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003064.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 537aa    MW: 58608.7 Da    PI: 6.7945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003064.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.00031238255219
                  HHHHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsa 19 
                  r +h++ E+rRR++iN++
  Aco003064.1 238 RSKHSATEQRRRSKINDR 255
                  889*************96 PP
2HLH247e-082763081955
                  HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +f+ Lrel+P+     ++K +Ka+ L +++eYI+ Lq
  Aco003064.1 276 RFQILRELIPQG----DQKRDKASFLLEVIEYIRFLQ 308
                  79*********7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-21233329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.22236307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-12238312No hitNo description
PfamPF000103.3E-5276308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MELRGKKTTH DFLSLHTVDP SFKRHDTSPS SSQGFFIKTR DFLQPLDDRE EESAGRDPAV  60
GPTEEERTLP GGIGAFSISH VSGPGSRAPL KPDRGTCGAV RGFGVKSKPE PDIDSGVYTT  120
QNVGVLGAPF STWAHSTARD SGPSSRGPWP SPFAAARANG FVGSLSFASR DNAATEGKRS  180
MEAASRSSRG AFDDDDDDDG DEFGRREASS SRKELSIKVD GKGSGSGSGT DQRPNTPRSK  240
HSATEQRRRS KINDRRVYVG CITLLFWLLI CFAMLRFQIL RELIPQGDQK RDKASFLLEV  300
IEYIRFLQEK VQKYEATNPE WNQESSNLLP WVNVYFRSFW KSAQSNNHGL SDPLQAIKNG  360
SSPSGYMFSG KYTDNGTQVA PAVLTGVAQN RTETEMMTAG FSSKAMETPQ NFINESMSGA  420
QAPWLRPHGA ADSAVNGEML SEQEELAIDQ ATVNFSNAYS QGVLTTLTQT LQNSGIDLSQ  480
ANLSVQINLA RRSKRTNANV TACTTKDQED PACSNQETGC REDVTQAPKR HKTDYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6653807e-73KM665380.1 Ananas bracteatus clone 50510 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090086.10.0transcription factor BIM2-like isoform X1
RefseqXP_020090087.10.0transcription factor BIM2-like isoform X1
TrEMBLA0A2H3ZP091e-170A0A2H3ZP09_PHODC; transcription factor BIM2 isoform X2
STRINGXP_008788920.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-47BES1-interacting Myc-like protein 2