PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003020.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family TCP
Protein Properties Length: 322aa    MW: 35659.9 Da    PI: 6.5569
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.11.2e-41862213133
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....seceaesssssasnsssgkaaksaa 95 
                   ++drhski T++g RdRR+Rls+++a +fF+Lqd+LGfdk+s+t++WLl+q+kpaik l + ss+++     ++ce+ +s+  +  s  +  a+ + 
  Aco003020.1  86 LRTDRHSKITTAQGVRDRRMRLSLDVAGKFFALQDMLGFDKASQTVDWLLTQSKPAIKRLINESSNKNnnktpEKCESCTSEWGDLISATSLTASRKG 183
                  589***********************************************************955555222223343333333333333335556666 PP

          TCP  96 kskksqksaasalnlakesrakarararertrekmrik 133
                  k  k+ ++aa   n++k  r+karararert+ek r+ 
  Aco003020.1 184 KVDKAVSKAAVDPNPSKGLREKARARARERTQEKRRMM 221
                  888888888888**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3887220IPR005333Transcription factor, TCP
PROSITE profilePS5136934.14887145IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.563200217IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLPYLNPQYL SGKSFYRQQE ASLPLSNSAA ALSPPTYDID LFAAHFLPSD WPGPLDTPDL  60
APQGSKEANA AAAPPAREGG QKKRRLRTDR HSKITTAQGV RDRRMRLSLD VAGKFFALQD  120
MLGFDKASQT VDWLLTQSKP AIKRLINESS NKNNNKTPEK CESCTSEWGD LISATSLTAS  180
RKGKVDKAVS KAAVDPNPSK GLREKARARA RERTQEKRRM MGNGMGNGCK IYQMAPAEAE  240
NIVKEGDCFN GDKNERSTVA VVPSWDICKN GKVDYLINEL MNKGFTGNIE EEEEEEEEEG  300
NSFGNMQFQD SSWDDYSMLS F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090872.10.0transcription factor TEOSINTE BRANCHED 1-like
TrEMBLA0A199UM251e-127A0A199UM25_ANACO; Transcription factor TCP18
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-25TCP family protein