PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002998.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CO-like
Protein Properties Length: 392aa    MW: 41869.9 Da    PI: 4.9412
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002998.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.82.2e-082769339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +r C+ + + ++++fC  ++ +lC+ C ++ H+       H +
  Aco002998.1 27 ARACEGCLRRRARWFCVADDAFLCQACDTAVHSAnplarrHHR 69
                 578*****************************65788888655 PP
2CCT67.82.9e-23335378144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Aco002998.1 335 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 378
                  9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.8E-112572IPR000315B-box-type zinc finger
PROSITE profilePS5011911.1062572IPR000315B-box-type zinc finger
PfamPF006437.2E-72771IPR000315B-box-type zinc finger
CDDcd000211.61E-82860No hitNo description
PfamPF062036.3E-18335377IPR010402CCT domain
PROSITE profilePS5101716.083335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSMSMNSGEA KESSAAAAAA AVGGRTARAC EGCLRRRARW FCVADDAFLC QACDTAVHSA  60
NPLARRHHRL PLRLRPLPLA DLKPAWFTRK ARTPRAARRL VPELLDSSSA DDDDDDQLLY  120
RVPIFDPALS EFCSPPPPPP SCDAAEDAAA ASSLTLNITT TADDCLAGFG TSDAELTEFA  180
ADMESLLGNG GGETSLCLET LGLSGGSGGE NSGLSVKAEM DDDDGRNGSA CGVELETDAE  240
MVGVNFVCGS PMGIEEGDDE KAAPSTEQRS WLRLDYEAII ASWGSSPWTD GERPQFKLGD  300
CWPDYTGMWM IGGGCRGGGH GEDVGPGRLG TDGGREARVS RYREKRRTRL FSKKIRYEVR  360
KLNAEKRPRM KGRFVKRACF ADAAAGAVCL S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345361RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089835.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A199UM400.0A0A199UM40_ANACO; Zinc finger protein CONSTANS-LIKE 16
STRINGORUFI06G10540.11e-110(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-31B-box type zinc finger protein with CCT domain