PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002964.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-X1
Protein Properties Length: 1098aa    MW: 117614 Da    PI: 7.8683
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002964.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.44.8e-06376393118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C ++CH+G C++C
  Aco002964.1 376 CGNHTCPEKCHPGTCGEC 393
                  ****************** PP
2zf-NF-X118.73.8e-06532550119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG+H Cq lCH+G CppC 
  Aco002964.1 532 CGQHACQLLCHTGHCPPCL 550
                  ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.18E-7133206No hitNo description
PROSITE profilePS500168.573140202IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.008143200IPR001841Zinc finger, RING-type
PROSITE patternPS013590143199IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.13E-6233295No hitNo description
SMARTSM004380.023257275IPR000967Zinc finger, NF-X1-type
PfamPF014228.2259274IPR000967Zinc finger, NF-X1-type
CDDcd060083.49E-10302350No hitNo description
PfamPF014220.37312329IPR000967Zinc finger, NF-X1-type
SMARTSM004380.085312331IPR000967Zinc finger, NF-X1-type
CDDcd060082.84E-9366409No hitNo description
PfamPF014220.0016376393IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002376395IPR000967Zinc finger, NF-X1-type
CDDcd060086.77E-13424472No hitNo description
PfamPF014220.001434451IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0072434453IPR000967Zinc finger, NF-X1-type
PfamPF0142243492503IPR000967Zinc finger, NF-X1-type
CDDcd060087.39E-8522565No hitNo description
PfamPF014223.1E-4532549IPR000967Zinc finger, NF-X1-type
SMARTSM004388.5E-4532551IPR000967Zinc finger, NF-X1-type
PfamPF014221.4589606IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0028589607IPR000967Zinc finger, NF-X1-type
PfamPF014220.036642657IPR000967Zinc finger, NF-X1-type
SMARTSM004383.8642677IPR000967Zinc finger, NF-X1-type
PfamPF014224.6679705IPR000967Zinc finger, NF-X1-type
SMARTSM004380.067686707IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MGLRCDQSIV LEDRTLRSRS DGHNRLEDAT APTSTQKDAS LHRRAAGAAS RRTVATAVAG  60
NRLEWVPRGS AAPARHPPPP PSAPSADPPQ HPRPSPSRYR HRRPAPPPPT APPDSGGGEE  120
PAEGVPQLVQ EIQERLARGT VECMICYDMV RRSAPIWSCG SCFSIFHLHC IRKWARSPTS  180
ADAPAPDSGG GSGWRCPGCQ SVQSVPAKDL SYTCFCARRR DPPNDLYITP HSCGEPCGKP  240
LDRSPPLVTA KEEMRACPHV CVLQCHPGPC PPCKAFAPRQ SCPCGKQTIM RRCADQKTPL  300
TCGQRCNRPL SCARHLCDKM CHTGECGPCQ VVIAASCFCK KKIEAVLCGD MAVKGELDDT  360
EGVFSCDAVC GRALSCGNHT CPEKCHPGTC GECNLLPQKI TTCHCGKTRL QKERESCLDP  420
IPTCSGVCGK VLPCGVHLCK ETCHEGHCPP CLVLVEQKCR CGSSSRTVEC SRVSEEKEEF  480
LCLKPCGRKK SCGRHRCTER CCPLSTPYGR IEAGDGWDPH LCSMPCGKKL RCGQHACQLL  540
CHTGHCPPCL ETIFTDLTCA CGLTSIPPPL PCGTPPPSCP LPCSVPQPCG HAASHTCHSG  600
NCPPCTLPVV KECVGGHVLL RNIPCGSKDI RCNQLCGKTR QCGLHACART CHPPPCDNPS  660
SAIGGGSGIG AKASCGQLCG APRGDCRHTC TAPCHPSSPC PDLRCEFTVT ISCSCGRITA  720
AVPCSAGGGS TSGFNTDSVF EASVVQKLPA PLQPLEANEK RIPLGQRKLC CDEECAKLER  780
KRVLADAFDI TPVNLDALHF GENSAASDLL SDLLRREPKW VFTVEERCKF LVLGKSKGGS  840
ATKLRSHVFC HMLKEKRDAV RHIAERWKLS VHAAGWEPKR FLVVHATPKS KPPARILGSK  900
PGTPVSAAHL PAFDPLVDMD PRLVVAMLDL PRDADVSALV LRFGGECELV WMNDKNALAV  960
FVDPMRAATA LRRLDHGSAY QGAAVVLQNS GPTLNNAWGL GAKTGEAASK SSNSWKKALV  1020
AESDSWGGEE WPGRSDAAVS AWAGTEGPPI VVSNNRWNVL DSESAMNLTK PEPVESSSSG  1080
IKEETPEEVD DWEEACE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055181e-45AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10.
GenBankAP0149621e-45AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-45CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090548.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A199VQF10.0A0A199VQF1_ANACO; NF-X1-type zinc finger protein NFXL1
STRINGXP_008789280.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1