PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002961.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARR-B
Protein Properties Length: 561aa    MW: 61978.9 Da    PI: 6.7111
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002961.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.82.4e-28228281155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Aco002961.1 228 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 281
                  79*******************.********************************8 PP
2Response_reg62.61.9e-21261501109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.................ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.................pDlillDiempgmdGlellkeireeepklpiivvtah 80 
                   vl+vdD+++ +++l+++l++ +y +v  +   e  ++ +   +                 +D+++ D+ mp+mdG++ll++   e  +lp+i+++a 
   Aco002961.1  26 VLVVDDDETCLRILESMLRRCRYHVVLWMYICETYIRVIAVTTccqatialsllrerkdgYDVVISDVHMPDMDGYKLLEHVGLEM-DLPVIMMSAD 121
                   799999999999999999988886665666665555555444444444555555555599**********************6644.8********* PP

                   TTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                   g  + + + +k Ga d+l Kp+ +e+l +
   Aco002961.1 122 GRTDAVMRGIKHGACDYLIKPIRIEALKN 150
                   *************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-3823184No hitNo description
SuperFamilySSF521724.41E-3023161IPR011006CheY-like superfamily
SMARTSM004482.3E-2324152IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.77225156IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-1826150IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.60E-2327156No hitNo description
Gene3DG3DSA:1.10.10.605.3E-30225286IPR009057Homeodomain-like
PROSITE profilePS5129410.707225287IPR017930Myb domain
SuperFamilySSF466891.97E-19226285IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-24228281IPR006447Myb domain, plants
PfamPF002497.7E-7230279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MASACAASGY GPRRREDDEF PAGLRVLVVD DDETCLRILE SMLRRCRYHV VLWMYICETY  60
IRVIAVTTCC QATIALSLLR ERKDGYDVVI SDVHMPDMDG YKLLEHVGLE MDLPVIMMSA  120
DGRTDAVMRG IKHGACDYLI KPIRIEALKN IWQHVIRKKW NANKDGGHSS SLEHPDRRFM  180
ADESEYTSSV TMNGGSDGGW NSHRKKRETK DDEDDGELDN DDPSASKKPR VVWSVELHQQ  240
FVSAVNQLGI DKAVPKRILE LMNVPGLTRE NVASHLQKFR LYLRRLSGVT EHENGLPNSF  300
CGLGQPNAKF SPAGRLDFQA LAAAGRIPPQ TLAALHFELF SQPLGTIAVA KQGHPVLLQA  360
STQGPKDFPF DQGITFGRPV SQLNLQKHFQ QNSFSFQHAS TPFSSYSSNR SVPGNNLASS  420
QSDNVMASPV LIPNQELKNV DMASVCSVTK NSCDSSVQNS TVHVPNLSTP GAELTSAVLD  480
GGRARKNFGF IGKGTCISRR FGLDEIESPT SSQCNWETCV NDDKDRVKKE PQWDFAEGSE  540
VESSNISRFS PSDIMGVLSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-23224287164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089717.10.0two-component response regulator ARR14-like
SwissprotA2XE311e-131ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-131ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A199VRC90.0A0A199VRC9_ANACO; Two-component response regulator ORR21
STRINGXP_008812974.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-110response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]