PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002883.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 277aa MW: 31647.5 Da PI: 5.0485

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002883.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.3e-28	153	203	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e i++e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ksl Aco002883.1 153 ERMITFEEVSRYFYMPITQAAKELNVGLTLLKKKCRELGIPRWPHRKMKSL 203 5689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.485	137	224	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-22	156	203	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MENIYGNWFS HEVGDVGYEQ QDLSALPIWN WPYHDYPVEE PVLYATPLAH SYISEPFFPA 60 QDLFQGEFGD LFDGESVGFW DEIKGVSDRK ESKNKEPLAC VEESNEEAKM TREGDQSMIR 120 STTITNVPSR SSSSSSSSSS SSNSSNSSGS REERMITFEE VSRYFYMPIT QAAKELNVGL 180 TLLKKKCREL GIPRWPHRKM KSLQTLIKNV QELGREDGEA GEAQLRSAIE ILEQERKLME 240 EKPFIQMEEK TKRLRQACFK ANYKKRRLMA LEGSQN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019710662.1	2e-88	protein RKD1-like
TrEMBL	A0A199VQN9	0.0	A0A199VQN9_ANACO; Protein RKD1
STRING	XP_008802620.1	2e-86	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-47	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco002883.1