PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002878.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 312aa MW: 35017.4 Da PI: 7.5005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002878.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.3e-52	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 l pGfrFhPtdeelv +yLk+kv++k+l++ e i+++diyk++PwdL + ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ + Aco002878.1 14 LLPGFRFHPTDEELVAFYLKRKVQQKSLSI-ELIRQLDIYKYDPWDLAkELATTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSeG 110 579*************************.89**********9445566899**********************************956 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkk+Lvfykgra +g+ktdW+mhe+rl Aco002878.1 111 NRCIGLKKSLVFYKGRAARGVKTDWMMHEFRL 142 667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-54	10	144	IPR003441	NAC domain
PROSITE profile	PS51005	51.717	14	176	IPR003441	NAC domain
Pfam	PF02365	4.3E-26	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDERSDAEKS DEVLLPGFRF HPTDEELVAF YLKRKVQQKS LSIELIRQLD IYKYDPWDLA 60 KELATTGEKE WYFYCPRDRK YRNSARPNRV TRAGFWKATG TDRPIYSSEG NRCIGLKKSL 120 VFYKGRAARG VKTDWMMHEF RLPSLTDSLP PKRPLDSNIS ANPSGSENVL TAAQATKVDQ 180 FAPENAKSRA EAAPAIQFSS NSTLQMFSPF EMPTQHPKCF TDMTPVILNS SPIDIGQSQQ 240 LNNGLLADLP VEMNGRVANR EEEMIARKHF DSRDPISCQS GTHRTIGFPF NLASDLSDDP 300 PSSVSIAVNS S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	14	142	17	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	14	142	17	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	14	142	17	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	14	142	17	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	14	142	20	145	NAC domain-containing protein 19
3swm_B	1e-48	14	142	20	145	NAC domain-containing protein 19
3swm_C	1e-48	14	142	20	145	NAC domain-containing protein 19
3swm_D	1e-48	14	142	20	145	NAC domain-containing protein 19
3swp_A	1e-48	14	142	20	145	NAC domain-containing protein 19
3swp_B	1e-48	14	142	20	145	NAC domain-containing protein 19
3swp_C	1e-48	14	142	20	145	NAC domain-containing protein 19
3swp_D	1e-48	14	142	20	145	NAC domain-containing protein 19
3ulx_A	1e-48	1	142	3	140	Stress-induced transcription factor NAC1
4dul_A	1e-48	14	142	17	142	NAC domain-containing protein 19
4dul_B	1e-48	14	142	17	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091239.1	0.0	protein FEZ
Swissprot	Q9ZVH0	9e-86	FEZ_ARATH; Protein FEZ
TrEMBL	A0A199VQL1	0.0	A0A199VQL1_ANACO; Protein FEZ (Fragment)
STRING	XP_008784123.1	1e-120	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	4e-88	NAC family protein

Link Out ? help Back to Top
Phytozome	Aco002878.1

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]