PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002761.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 314aa    MW: 34623 Da    PI: 4.6446
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002761.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-1965118356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  Aco002761.1  65 KKRRLSVEQVRALEKNFEVENKLEPERKQRLAQELGLQPRQVAVWFQNRRARWK 118
                  456899***********************************************9 PP
2HD-ZIP_I/II128.92e-4164156193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktk+lE+d++aLk++ydal+ + ++L++++e+L++el++
  Aco002761.1  64 EKKRRLSVEQVRALEKNFEVENKLEPERKQRLAQELGLQPRQVAVWFQNRRARWKTKRLERDFAALKASYDALRLDYDALHRDKEKLQAELDA 156
                  69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-2046121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2046120IPR009057Homeodomain-like
PROSITE profilePS5007117.6760120IPR001356Homeobox domain
SMARTSM003895.8E-1863124IPR001356Homeobox domain
CDDcd000862.64E-1765121No hitNo description
PfamPF000461.8E-1665118IPR001356Homeobox domain
PRINTSPR000319.3E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000319.3E-6100116IPR000047Helix-turn-helix motif
PfamPF021833.0E-16120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKRHASSDQL ISLCPPGEEK GLYGRGFSLL EGMEEDEYGD EEMISSIGGN GGGSGGGGGG  60
GGGEKKRRLS VEQVRALEKN FEVENKLEPE RKQRLAQELG LQPRQVAVWF QNRRARWKTK  120
RLERDFAALK ASYDALRLDY DALHRDKEKL QAELDALKGK LGQPNISFSS VKEEEQEEEE  180
EEEEEEEELE PVAAAESETK AAAAPALESD SSAVLSDELL PPAASAAAFE NSSQNCFATA  240
SSPLVDSRAH KGGGFYFYQQ HQHQHQHQHQ QQQYHLMMKV EEGAFFGGEE PCSSLFSEEQ  300
ARGTTRITGT RSS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091146.10.0homeobox-leucine zipper protein HOX20-like
SwissprotA2YWC01e-56HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-56HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A199VE201e-164A0A199VE20_ANACO; Homeobox-leucine zipper protein HOX20
STRINGXP_008805896.18e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-44homeobox protein 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]