PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 316aa MW: 34281.8 Da PI: 8.5005 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.7 | 8.8e-34 | 20 | 111 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e++e +e++++isw e+g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv ++ weF+++sF++g++ ll++i+ Aco002688.1 20 FLMKTHEMVEAAETDDVISWGEEGRSFVVWKPVEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVVPHR---------WEFANESFRRGEQGLLSSIR 107 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Aco002688.1 108 RRKA 111 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-36 | 13 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.03E-33 | 15 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-53 | 16 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.2E-30 | 20 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-17 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-17 | 58 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 59 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-17 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MTHKGKGSGS GSGGSGPAPF LMKTHEMVEA AETDDVISWG EEGRSFVVWK PVEFARDLLP 60 LHFKHNNFSS FVRQLNTYGF RKVVPHRWEF ANESFRRGEQ GLLSSIRRRK AAPPLPQSPQ 120 PGTSGCSAQL LPPPPPLLFP PSSVTNSGDV HSSSSTSSPS PPPPPTQKLA QLSHENEQLK 180 KHNQILSTEL AQAKQQCDEL LGFLSKFVDV RGLNFDLLMQ ENAAAEETTK EREDAVERKE 240 EAKEGKLKLF GVILKGLEVG EGNKGGMRKR GLCEEGDACG VDERRPMKMG FGAPPWMGVS 300 AAAAAVQQRG GKVCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-20 | 11 | 109 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-20 | 11 | 109 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-20 | 11 | 109 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061433 | 2e-78 | AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence. | |||
GenBank | HQ858829 | 2e-78 | HQ858829.1 Oryza sativa Japonica Group isolate UT1328 HSF-BDB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020089914.1 | 0.0 | heat stress transcription factor B-1-like | ||||
Swissprot | Q67TP9 | 1e-83 | HSFB1_ORYSJ; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A199V5F4 | 1e-179 | A0A199V5F4_ANACO; Heat stress transcription factor B-1 | ||||
STRING | GSMUA_Achr10P30120_001 | 5e-98 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 3e-58 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Aco002688.1 |
Publications ? help Back to Top | |||
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