PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HSF | ||||||||
Protein Properties | Length: 334aa MW: 36533.7 Da PI: 8.3035 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.4 | 4.6e-33 | 24 | 125 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES.SSS........SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.eng........nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y++++d+++++++sw ++g ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv e+ weF+++ F+kg Aco002684.1 24 FLTKTYQLVDDPATDHVVSWGdDDGdgggggraHTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKG 111 9********************5555889999999****************************************999.........*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +k+ll++i+r+k + Aco002684.1 112 QKHLLCEIQRRKAT 125 ***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.0E-35 | 16 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-55 | 20 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.16E-31 | 21 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-29 | 24 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 72 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEGCWEGCGG GGGGEAQKPV PAPFLTKTYQ LVDDPATDHV VSWGDDDGDG GGGGRAHTFV 60 VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFRKVVPER WEFANEFFRK GQKHLLCEIQ 120 RRKATTSAST SSPSSPLHFP PLFATLDHHH HHHHLHHHHH HHHHDRRYNH INHPPRLLSL 180 PASPAGDSGG TGSADAATTL MAENERLRRS NAALLSELAH MKRLYNDIIY FVQNHVQPVA 240 PSFTASPPPR PPPLRRSREP ELAAVNSGSA TSSSSLTVAE EPSPTTPPAA RRLRLFGVAL 300 KCGSALHRDE PGSPAARQEA AGFDTIASSP PTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-20 | 20 | 127 | 17 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020091074.1 | 0.0 | heat stress transcription factor B-4c-like | ||||
Swissprot | Q9C635 | 2e-84 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A199V5D3 | 1e-165 | A0A199V5D3_ANACO; Heat stress transcription factor B-4 | ||||
STRING | XP_008779895.1 | 6e-91 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 7e-56 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Aco002684.1 |