PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002636.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 665aa    MW: 73320.9 Da    PI: 6.6956
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002636.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.8e-211671156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ +++t+ q++ Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Aco002636.1 16 KKRYHRHTPMQIQMLEAMFKECPHPDEKQRMHLSRELGLEPRQIKFWFQNRRTQMK 71
                 688999***********************************************998 PP
2START170.88.8e-541493713206
                  HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                  a  a++e++++a+ +e +Wv+          +e++d   qk+++       ++ea+r+sg+v m+++ lv  ++d + +W e l     ka tlev+ 
  Aco002636.1 149 ATNAMEEVIRLAQTDEHLWVRNGgdrgevmCIETYDRMFQKPDDRYRdpdIRIEASRDSGLVLMNATALVDVFMDAG-KWLEFLSaiisKARTLEVLA 245
                  6789*****************998889888899999999999775559999**************************.****999999********** PP

                  TT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
        START  87 sg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                  +g     g l lm+ el +lsp+vp R+f f+Ry+rq  +g w+i+dvS+d +++++   s  R+++lpSg+li++++ng+skvtwveh++ ++++  
  Aco002636.1 246 TGmvgrsGSLLLMYEELHVLSPVVPtREFHFLRYCRQIDQGLWAIADVSLDLNRENQ-FNSPLRSRRLPSGCLIQDMPNGYSKVTWVEHMEIEEKVSt 342
                  ********************************************************9.7999***********************************9 PP

                  HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 178 hwllrslvksglaegaktwvatlqrqcek 206
                  h l+r l++sg+a+ga++w+ tlqr ce+
  Aco002636.1 343 HLLYRELINSGAAFGAQRWLTTLQRTCER 371
                  ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-22567IPR009057Homeodomain-like
SuperFamilySSF466893.17E-20871IPR009057Homeodomain-like
PROSITE profilePS5007117.5081373IPR001356Homeobox domain
SMARTSM003892.5E-201477IPR001356Homeobox domain
CDDcd000862.44E-191671No hitNo description
PfamPF000461.1E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084849.744138374IPR002913START domain
SuperFamilySSF559612.2E-35140373No hitNo description
CDDcd088751.21E-108142370No hitNo description
Gene3DG3DSA:3.30.530.202.6E-7147342IPR023393START-like domain
SMARTSM002347.7E-42147371IPR002913START domain
PfamPF018527.6E-46149371IPR002913START domain
SuperFamilySSF559612.2E-16390479No hitNo description
SuperFamilySSF559612.2E-16515656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MDFGDDQECS DAQRKKKRYH RHTPMQIQML EAMFKECPHP DEKQRMHLSR ELGLEPRQIK  60
FWFQNRRTQM KLDRVSGLTS KYLGRPITQL PLIQHLAASS LDLSVGALGN PTIAPSLDLD  120
LLTGSGSVTV PHFPTAVPEI EKPIMVEMAT NAMEEVIRLA QTDEHLWVRN GGDRGEVMCI  180
ETYDRMFQKP DDRYRDPDIR IEASRDSGLV LMNATALVDV FMDAGKWLEF LSAIISKART  240
LEVLATGMVG RSGSLLLMYE ELHVLSPVVP TREFHFLRYC RQIDQGLWAI ADVSLDLNRE  300
NQFNSPLRSR RLPSGCLIQD MPNGYSKVTW VEHMEIEEKV STHLLYRELI NSGAAFGAQR  360
WLTTLQRTCE RFAGLMATTS RELGGVIPSP EGKRSMMKLS QRMVNNFCAS LSSSQIQRWT  420
MLSGLSDVGV RVTVHRSSDP GQPSGVVLSA ATSLWLPMSC ERVFSFFRDE NMRPQVLTVY  480
LTPRFLLLAV LSSGNSFEFG CNLSQWDVLS SGNPVQEVAR ISNGSDPGNC ISLLRGLNSS  540
QSSMLILQES CTDASGSLVV YAPIDIPAIN IVMSGEDPSN IALLPSGFTI LPDGRAGGVR  600
GASTSSSAHQ TGFNSSGSLL TVAFQILVSS LPSSKLNVES VATVNNLIST TVQQIKAALN  660
CPSG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6627856e-46KM662785.1 Ananas bracteatus clone 46768a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089796.10.0homeobox-leucine zipper protein ROC8-like isoform X2
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A199VVK60.0A0A199VVK6_ANACO; Homeobox-leucine zipper protein ROC8
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11