PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002582.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 291aa    MW: 32774.5 Da    PI: 5.6097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002582.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++lv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
      Aco002582.1 23 RGPWTVEEDLILVNYITAHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding54.23.3e-1776119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Aco002582.1  76 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.871870IPR017930Myb domain
SuperFamilySSF466892.25E-3120117IPR009057Homeodomain-like
SMARTSM007172.9E-152272IPR001005SANT/Myb domain
PfamPF002493.7E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-232477IPR009057Homeodomain-like
CDDcd001675.28E-122570No hitNo description
PROSITE profilePS5129424.24871125IPR017930Myb domain
SMARTSM007171.6E-1575123IPR001005SANT/Myb domain
PfamPF002495.1E-1676119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2478124IPR009057Homeodomain-like
CDDcd001672.18E-1280119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEMGMICNSA TPPSDQEEMD LRRGPWTVEE DLILVNYITA HGEGRWNSLA RCAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT PEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKHAKQLRC DVNSKQFKDL MRYLWMPRLV ERIRAASGNG EVDHVYQNIA PSMMAVDQMI  180
DGNYDDQNTG QAKPCPEDSS TAGSSSVESA GMHFSSPPVS SACFTDYYAG APGGEDKSGD  240
GIHTAQFDGN WTESLPSPGG YSHLGLPDFD FGGWGENLWS VDDIWLQQQY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-242012324126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086902.10.0transcription factor MYB108-like
RefseqXP_020086903.10.0transcription factor MYB108-like
SwissprotQ10MB42e-92MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A199V9V21e-177A0A199V9V2_ANACO; Transcription factor MYB108
STRINGXP_008781174.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.19e-86myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]